RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CADM4Q8NFZ8 388 aa13.57□□□□□ -0.24
VPS28-202ENST00000377348 SNX19Q92543 992 aa13.57□□□□□ -0.24
VPS28-202ENST00000377348 GDAP1L1Q96MZ0 367 aa13.57□□□□□ -0.24
VPS28-202ENST00000377348 SEMA4GQ9NTN9 838 aa13.57□□□□□ -0.24
VPS28-202ENST00000377348 DDX56Q9NY93 547 aaKnown RBP13.57□□□□□ -0.24
VPS28-202ENST00000377348 PCDHGA5Q9Y5G8 931 aa13.57□□□□□ -0.24
VPS28-202ENST00000377348 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.57□□□□□ -0.24
VPS28-202ENST00000377348 SLCO1B1Q9Y6L6 691 aa13.57□□□□□ -0.24
VPS28-202ENST00000377348 TNRC6BQ9UPQ9 1833 aaKnown RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 TTC24A2A3L6 582 aaPredicted RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 METTL12A8MUP2 240 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 MUSKO15146 869 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 IGSF6O95976 241 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 UGT2B4P06133 528 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 KRT10P13645 584 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 CDKN2BP42772 138 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 DYNLT1P63172 113 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 LBRQ14739 615 aaKnown RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 PIP5KL1Q5T9C9 394 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 TMCO4Q5TGY1 634 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 NPNTQ6UXI9 565 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 RFX6Q8HWS3 928 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 SYT12Q8IV01 421 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 LRRC57Q8N9N7 239 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 TSEN2Q8NCE0 465 aaKnown RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 FOXJ1Q92949 421 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 FAM131CQ96AQ9 280 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 KLHL32Q96NJ5 620 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 CINPQ9BW66 212 aaPredicted RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 MAK16Q9BXY0 300 aaKnown RBP13.56□□□□□ -0.24
VPS28-202ENST00000377348 MIR1-1HGQ9H1L0 117 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 DYRK4Q9NR20 520 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 DTLQ9NZJ0 730 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 PILRBQ9UKJ0 227 aa13.56□□□□□ -0.24
VPS28-202ENST00000377348 CEP192Q8TEP8 1941 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3DA0A087WVF3 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3IA0A087WXS9 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3EA0A087X179 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3KA0A087X1G2 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3FA6NER0 549 aaPredicted RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 LRRC72A6NJI9 287 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 ZNF487B1APH4 448 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3LB9A6J9 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 APOL1O14791 398 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 PLRG1O43660 514 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 LRP3O75074 770 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 PIGNO95427 931 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 POP4O95707 220 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 IGHV4-34P06331 123 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3HP0C7X1 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 ZNF806P0C7X5 589 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 CTNNA1P35221 906 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 GARSP41250 739 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 TAS2R38P59533 333 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 PPP2CBP62714 309 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 PPP2CAP67775 309 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 ADCY2Q08462 1091 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 GALNT2Q10471 571 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 CSRP2Q16527 193 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 WDR45BQ5MNZ6 344 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 FAM182AQ5T1J6 154 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 SYCP2LQ5T4T6 812 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 KAZNQ674X7 775 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 KIAA0895LQ68EN5 471 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 SLC9A4Q6AI14 798 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3GQ6DHY5 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3CQ6IPX1 549 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 SPOCD1Q6ZMY3 1216 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 PRR23CQ6ZRP0 262 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 ERN2Q76MJ5 926 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 PARS2Q7L3T8 475 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 VSIG1Q86XK7 387 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 KATNAL2Q8IYT4 538 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 TBC1D3Q8IZP1 549 aaPredicted RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 TXLNBQ8N3L3 684 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 OR2T34Q8NGX1 318 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 KIAA1524Q8TCG1 905 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 BIRC7Q96CA5 298 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 PPP1R16AQ96I34 528 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 CALR3Q96L12 384 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 NSMCE3Q96MG7 304 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 ZNF599Q96NL3 588 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 FSCN3Q9NQT6 498 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 VPS45Q9NRW7 570 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 RXFP3Q9NSD7 469 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 EIF2B4Q9UI10 523 aaKnown RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.55□□□□□ -0.24
VPS28-202ENST00000377348 HEY1Q9Y5J3 304 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 CAPN6Q9Y6Q1 641 aa13.55□□□□□ -0.24
VPS28-202ENST00000377348 C16orf96A6NNT2 1141 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 ZRANB2O95218 330 aaKnown RBP eCLIP13.54□□□□□ -0.242e-7■■□□□ 13.6
VPS28-202ENST00000377348 FTCDO95954 541 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 ITGB7P26010 798 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 NEK3P51956 506 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 MAXP61244 160 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 ZNF235Q14590 738 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 RFTN1Q14699 578 aaPredicted RBP13.54□□□□□ -0.24
VPS28-202ENST00000377348 TAZQ16635 292 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 ZNF805Q5CZA5 627 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms