RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SEC23AQ15436 765 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 NEDD8Q15843 81 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 RFX4Q33E94 735 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 RAET1GQ6H3X3 334 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 RNF44Q7L0R7 432 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 C16orf59Q7L2K0 433 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 ARCQ7LC44 396 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 PROSER1Q86XN7 944 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 RGL4Q8IZJ4 473 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 TEFMQ96QE5 360 aaKnown RBP6.53□□□□□ -1.36
UPF2-201ENST00000356352 CDRT15Q96T59 188 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 CCNB1IP1Q9NPC3 277 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 CMTM6Q9NX76 183 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 SMPD4Q9NXE4 827 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 KLQ9UEF7 1012 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 DDX20Q9UHI6 824 aaKnown RBP6.53□□□□□ -1.36
UPF2-201ENST00000356352 C3orf18Q9UK00 162 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 MRPS33Q9Y291 106 aaKnown RBP6.53□□□□□ -1.36
UPF2-201ENST00000356352 PCDHGB3Q9Y5G1 929 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 TIMM13Q9Y5L4 95 aaPredicted RBP6.53□□□□□ -1.36
UPF2-201ENST00000356352 LOC102724159A0A0B4J2E5 919 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 USP17L7P0C7H9 530 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 BMP7P18075 431 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 TNFRSF8P28908 595 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 PPM1AP35813 382 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 SULT2A1Q06520 285 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 SMARCB1Q12824 385 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 PWP2Q15269 919 aaKnown RBP6.53□□□□□ -1.36
UPF2-201ENST00000356352 GPAT3Q53EU6 434 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 C3orf67Q6ZVT6 689 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 GPC2Q8N158 579 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 AMER2Q8N7J2 671 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 KLHL23Q8NBE8 558 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 SPATA20Q8TB22 786 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 ZNF398Q8TD17 642 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 ASB8Q9H765 288 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 ZFYVE1Q9HBF4 777 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 SEMA4BQ9NPR2 832 aaPredicted RBP6.53□□□□□ -1.36
UPF2-201ENST00000356352 L1RE1Q9UN81 338 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 BTBD3Q9Y2F9 522 aa6.53□□□□□ -1.36
UPF2-201ENST00000356352 TAF4O00268 1085 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 AP3D1O14617 1153 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 PARNO95453 639 aaKnown RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 CCNYL3P0C7X3 344 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 H2AFXP16104 143 aaPredicted RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 PPIDQ08752 370 aaKnown RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 USP41Q3LFD5 358 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 NOL9Q5SY16 702 aaKnown RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 ESRP1Q6NXG1 681 aaKnown RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 TRIM40Q6P9F5 258 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 OTOP1Q7RTM1 612 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 OFCC1Q8IZS5 231 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 TCAIMQ8N3R3 496 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 FBXL16Q8N461 479 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 EFCAB3Q8N7B9 438 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 TEX47Q8TBZ9 253 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 WDR60Q8WVS4 1066 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 TIFAQ96CG3 184 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 SENP8Q96LD8 212 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 MRPL57Q9BQC6 102 aaKnown RBP6.52□□□□□ -1.36
UPF2-201ENST00000356352 ULBP1Q9BZM6 244 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 C3orf14Q9HBI5 128 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 C8orf4Q9NR00 106 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.52□□□□□ -1.36
UPF2-201ENST00000356352 EHD3Q9NZN3 535 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 CCDC167Q9P0B6 97 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 PHF11Q9UIL8 331 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 TFR2Q9UP52 801 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 ERGIC3Q9Y282 383 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 LYVE1Q9Y5Y7 322 aa6.52□□□□□ -1.36
UPF2-201ENST00000356352 CEMIPQ8WUJ3 1361 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SLITRK3O94933 977 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PIGNO95427 931 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ADH1AP07327 375 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SNRPB2P08579 225 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 BDNFP23560 247 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ADSSP30520 456 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 RPL4P36578 427 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ZNF143P52747 638 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ERVK-9P63128 1117 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 MRPS6P82932 125 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 FAAP100Q0VG06 881 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ATP1A4Q13733 1029 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 INTS5Q6P9B9 1019 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ADGRG2Q8IZP9 1017 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 BHLHE22Q8NFJ8 381 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 S100ZQ8WXG8 99 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 HAVCR1Q96D42 359 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ITCHQ96J02 903 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PDCD10Q9BUL8 212 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 LMAN2LQ9H0V9 348 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PORCNQ9H237 461 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SEMA4AQ9H3S1 761 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SPAG4Q9NPE6 437 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 NECTIN3Q9NQS3 549 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 IKZF3Q9UKT9 509 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 GPSM3Q9Y4H4 160 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PTCH2Q9Y6C5 1203 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ZNF780BQ9Y6R6 833 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms