RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RGS7P49802 495 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 HK2P52789 917 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 EN1Q05925 392 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 FSTL1Q12841 308 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 KCNJ8Q15842 424 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PHKG1Q16816 387 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TRIM16LQ309B1 348 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 XKR3Q5GH77 459 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SPANXN3Q5MJ09 141 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TSTD2Q5T7W7 516 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 MAP1SQ66K74 1059 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 THOC7Q6I9Y2 204 aaKnown RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 LRRC8EQ6NSJ5 796 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 NEPROQ6NW34 567 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 NANOGNBQ7Z5D8 188 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PIGZQ86VD9 579 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 VSIG10LQ86VR7 867 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 DHFR2Q86XF0 187 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PACRGLQ8N7B6 248 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TERB1Q8NA31 727 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OR2T34Q8NGX1 318 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OR2T3Q8NH03 318 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SREK1Q8WXA9 508 aaKnown RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 ZNF669Q96BR6 464 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 ZNF641Q96N77 438 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 TCHPQ9BT92 498 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 MROQ9BYG7 248 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 GBA3Q9H227 469 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CCDC68Q9H2F9 335 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TPK1Q9H3S4 243 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TASP1Q9H6P5 420 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 ZFYVE28Q9HCC9 887 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 GBA2Q9HCG7 927 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 JPH1Q9HDC5 661 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 SPAG4Q9NPE6 437 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 AGPAT4Q9NRZ5 378 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TMEM9Q9P0T7 183 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 VPS51Q9UID3 782 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SLC27A5Q9Y2P5 690 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CLRN2A0PK11 232 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CCDC162PA2VCL2 907 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 RNF103O00237 685 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CLOCKO15516 846 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 DLX3O60479 287 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TPST1O60507 370 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 USP12O75317 370 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 NR3C2P08235 984 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 KRT19P08727 400 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 MAP4P27816 1152 aaKnown RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 SLC7A2P52569 658 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OSTNP61366 133 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PPIL2Q13356 520 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 ATP6AP1Q15904 470 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PPP1R3AQ16821 1122 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 IRAK1BP1Q5VVH5 260 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 STYK1Q6J9G0 422 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CAMK1DQ8IU85 385 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SNX29P2Q8IUI4 249 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SPNS2Q8IVW8 549 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OR52K1Q8NGK4 314 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OR9I1Q8NGQ6 314 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 USP33Q8TEY7 942 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 STYXQ8WUJ0 223 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 KCTD4Q8WVF5 259 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SNX19Q92543 992 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 GPRASP2Q96D09 838 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TMEM176AQ96HP8 235 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 VPS39Q96JC1 886 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CSPG4P5Q96PW8 444 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 KCTD15Q96SI1 283 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 TBCBQ99426 244 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OLFM1Q99784 485 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 MTG1Q9BT17 334 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 NAT9Q9BTE0 207 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 EFHD1Q9BUP0 239 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 HERC2P3Q9BVR0 1158 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 FTHL17Q9BXU8 183 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 ADAMTS10Q9H324 1103 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TMEM134Q9H6X4 195 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 SLC38A10Q9HBR0 1119 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TNFRSF12AQ9NP84 129 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 EIF2B3Q9NR50 452 aaKnown RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 CCM2LQ9NUG4 571 aaPredicted RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 ATAD3AQ9NVI7 634 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CCDC167Q9P0B6 97 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 DAPK2Q9UIK4 370 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OAZ3Q9UMX2 235 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 ST14Q9Y5Y6 855 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 UBR3Q6ZT12 1888 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 ANK1P16157 1881 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SLCO1B7G3V0H7 640 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 OGTO15294 1046 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TPD52L2O43399 206 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 MFSD11O43934 449 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 GABBR2O75899 941 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 RAD17O75943 681 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CABYRO75952 493 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 BCL10O95999 233 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CYP2C9P11712 490 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 OXTRP30559 389 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms