RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 AAR2Q9Y312 384 aaKnown RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 RAP2CQ9Y3L5 183 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 COL1A2P08123 1366 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 TSC22D2O75157 780 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 MAGP20916 626 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 MPSTP25325 297 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 GRIK1P39086 918 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 TJAP1Q5JTD0 557 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 TLDC1Q6P9B6 456 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 CENPLQ8N0S6 344 aaPredicted RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 GLIS1Q8NBF1 620 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 KCTD4Q8WVF5 259 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 OTULINQ96BN8 352 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 SNRNP25Q9BV90 132 aaKnown RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 PDZD7Q9H5P4 517 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 TPD52L2O43399 206 aaKnown RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 TCEA3O75764 348 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 PCNAP12004 261 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 CDKN2BP42772 138 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 CDH17Q12864 832 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 ARMCX6Q7L4S7 300 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 CHSY1Q86X52 802 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 SPATA2LQ8IUW3 424 aaPredicted RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 DRAXINQ8NBI3 349 aaPredicted RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 PSMA8Q8TAA3 256 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 LGMNQ99538 433 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 NXF3Q9H4D5 531 aaKnown RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 DSEQ9UL01 958 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 TRUB2O95900 331 aaKnown RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 OR1G1P47890 313 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 EFL1Q7Z2Z2 1120 aaKnown RBP15.53■□□□□ 0.08
SHH-201ENST00000297261 ANAPC2Q9UJX6 822 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 PCDHA11Q9Y5I1 949 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 NRLP54845 237 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 HERC6Q8IVU3 1022 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 FAM126BQ8IXS8 530 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 POC5Q8NA72 575 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 SPATA17Q96L03 361 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 TCF12Q99081 682 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 CDH19Q9H159 772 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 FZD8Q9H461 694 aa15.53■□□□□ 0.08
SHH-201ENST00000297261 A0A0A0MRY4 1105 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 VNN1O95497 513 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 ZBTB11O95625 1053 aaPredicted RBP15.52■□□□□ 0.08
SHH-201ENST00000297261 POMCP01189 267 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 CCDC166P0CW27 439 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 CPB1P15086 417 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 EDNRBP24530 442 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 CRHR1P34998 444 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 NR6A1Q15406 480 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 TAS1R3Q7RTX0 852 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 C1orf127Q8N9H9 656 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 COX4I2Q96KJ9 171 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 SPATA13Q96N96 652 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 GAD1Q99259 594 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 MINDY3Q9H8M7 445 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 RAB26Q9ULW5 256 aa15.52■□□□□ 0.08
SHH-201ENST00000297261 DHRS12A0PJE2 317 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 FAM149AA5PLN7 773 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 AGRPO00253 132 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 TREHO43280 583 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 LZTS3O60299 673 aaPredicted RBP15.52■□□□□ 0.07
SHH-201ENST00000297261 TADA2AO75478 443 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 OR6B1O95007 311 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 MED26O95402 600 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 CD48P09326 243 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 NR2C2P49116 596 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 GEMP55040 296 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 KRR1Q13601 381 aaKnown RBP15.52■□□□□ 0.07
SHH-201ENST00000297261 HSPBAP1Q96EW2 488 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 COL11A2P13942 1736 aaPredicted RBP15.52■□□□□ 0.07
SHH-201ENST00000297261 PIGRP01833 764 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 GRM5P41594 1212 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 FLT3LGP49771 235 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 GDF10P55107 478 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 BROXQ5VW32 411 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 MRNIPQ6NTE8 343 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 TMEM192Q8IY95 271 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 CDHR5Q9HBB8 845 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 HPS4Q9NQG7 708 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 COMMD8Q9NX08 183 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 XPR1Q9UBH6 696 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 TRPV2Q9Y5S1 764 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 ECM29Q5VYK3 1845 aa15.52■□□□□ 0.07
SHH-201ENST00000297261 MAGEB16A2A368 324 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TMEM247A6NEH6 219 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TSPAN1O60635 241 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 C2P06681 752 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 ABL2P42684 1182 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 CCT8P50990 548 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 BST2Q10589 180 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 PWP1Q13610 501 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 C8orf59Q8N0T1 100 aaPredicted RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 PANX3Q96QZ0 392 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TBCDQ9BTW9 1192 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TRIM54Q9BYV2 358 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 ARMC7Q9H6L4 198 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 CXorf21Q9HAI6 301 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TRIM17Q9Y577 477 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 FADS3Q9Y5Q0 445 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms