RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MORF4L1Q9UBU8 362 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 BLOC1S6Q9UL45 172 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SUPT3HB4E1H0 165 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 H0Y626 953 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 TRIM16O95361 564 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 OGFRL1Q5TC84 451 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 BNIPLQ7Z465 357 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 ATPAF2Q8N5M1 289 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 CCDC185Q8N715 623 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 PPP1R13LQ8WUF5 828 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 ZNF512Q96ME7 567 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 KCTD14Q9BQ13 255 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 THUMPD3Q9BV44 507 aaKnown RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 VILLO15195 856 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 ZSCAN9O15535 394 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 TSPAN3O60637 253 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 JAK1P23458 1154 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 GPD2P43304 727 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 CD151P48509 253 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 SERPINB10P48595 397 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 IKBKEQ14164 716 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 RBBP7Q16576 425 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 FBXO48Q5FWF7 155 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 MFSD4BQ5TF39 518 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 EPGNQ6UW88 154 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 CCDC103Q8IW40 242 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 FSTL5Q8N475 847 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 APPL2Q8NEU8 664 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 FNDC8Q8TC99 324 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 MZB1Q8WU39 189 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 GAB3Q8WWW8 586 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 RBBP8Q99708 897 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 SOX17Q9H6I2 414 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 ALG9Q9H6U8 611 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 MID1IP1Q9NPA3 183 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 EBF1Q9UH73 591 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 KIAA1257Q9ULG3 409 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 HES2Q9Y543 173 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 COPG1Q9Y678 874 aaKnown RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 MYO1GB0I1T2 1018 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 H3BNX3 289 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 LSM1O15116 133 aaKnown RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 KRT8P05787 483 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 ASPAP45381 313 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 LIMK2P53671 638 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 CDH17Q12864 832 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 DNAJC14Q6Y2X3 702 aaPredicted RBP11.17□□□□□ -0.62
CLN3-244ENST00000636147 TNIP3Q96KP6 325 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 ADI1Q9BV57 179 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 SQORQ9Y6N5 450 aa11.17□□□□□ -0.62
CLN3-244ENST00000636147 A0A1B0GTW7 788 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 SNX2O60749 519 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 FUT4P22083 530 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 HMGB2P26583 209 aaKnown RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 PSMB9P28065 219 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 BAG6P46379 1132 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 CDK9P50750 372 aaKnown RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 CHRNB3Q05901 458 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 FRG1Q14331 258 aaKnown RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 C15orf39Q6ZRI6 1047 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 TTC30AQ86WT1 665 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 PQLC3Q8N755 202 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 GRIN3AQ8TCU5 1115 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 CAPSLQ8WWF8 208 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 RAD21L1Q9H4I0 556 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 TMEM134Q9H6X4 195 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 NSMCE4AQ9NXX6 385 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 UTP6Q9NYH9 597 aaKnown RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 PCDHGB4Q9UN71 923 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 BTRCQ9Y297 605 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 CRYL1Q9Y2S2 319 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 PCDHGB5Q9Y5G0 923 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 CSADQ9Y600 493 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 MATN2O00339 956 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 ZNF182P17025 639 aaPredicted RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 ERCC2P18074 760 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 UBA1P22314 1058 aaKnown RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 MAGEA10P43363 369 aaPredicted RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 BCAT1P54687 386 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 MPP1Q00013 466 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 SNAPC2Q13487 334 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 GTF2H3Q13889 308 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 DPYSQ14117 519 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 KIZQ2M2Z5 673 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 VPS26BQ4G0F5 336 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 C6orf183Q5T699 404 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 TAF2Q6P1X5 1199 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 KCTD8Q6ZWB6 473 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 ZNF567Q8N184 647 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 IFT43Q96FT9 208 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 FAR2Q96K12 515 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 CEP19Q96LK0 163 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 KCTD15Q96SI1 283 aaPredicted RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 C1orf50Q9BV19 199 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 PNPLA8Q9NP80 782 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 TMPRSS4Q9NRS4 437 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 VPS45Q9NRW7 570 aa11.16□□□□□ -0.62
CLN3-244ENST00000636147 MAP3K20Q9NYL2 800 aaKnown RBP11.16□□□□□ -0.62
CLN3-244ENST00000636147 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms