RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NEK3P51956 506 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 PTP4A2Q12974 167 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 ILKQ13418 452 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 COL28A1Q2UY09 1125 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 TMEM259Q4ZIN3 620 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 FKBP15Q5T1M5 1219 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 SEL1L3Q68CR1 1132 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 FBXL19Q6PCT2 694 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 TRIM72Q6ZMU5 477 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 STRADAQ7RTN6 431 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 NLRP14Q86W24 1093 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 PLPP6Q8IY26 295 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 CENPIQ92674 756 aaPredicted RBP16.39■□□□□ 0.21
CLN3-229ENST00000567963 C11orf70Q9BRQ4 267 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 MAGEB5Q9BZ81 275 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 KLHL11Q9NVR0 708 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 SIK3Q9Y2K2 1263 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 FCF1Q9Y324 198 aaKnown RBP16.39■□□□□ 0.21
CLN3-229ENST00000567963 DAAM1Q9Y4D1 1078 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 URB1O60287 2271 aaKnown RBP16.39■□□□□ 0.21
CLN3-229ENST00000567963 TRPM6Q9BX84 2022 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 FAM72CH0Y354 149 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 GJB6O95452 261 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 RHOQP17081 205 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 DGKAP23743 735 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 ACP1P24666 158 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 L1CAMP32004 1257 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 ACVRL1P37023 503 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 ETFBP38117 255 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 STAT1P42224 750 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 MAPKAPK2P49137 400 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 CCNHP51946 323 aaPredicted RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 CLDN2P57739 230 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 TARDBPQ13148 414 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-229ENST00000567963 ZNF211Q13398 564 aaPredicted RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 PROX2Q3B8N5 592 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 FAM72AQ5TYM5 149 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 FAM72DQ6L9T8 149 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 RWDD4Q6NW29 188 aaKnown RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 RBM43Q6ZSC3 357 aaKnown RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 ABI3BPQ7Z7G0 1075 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 FAM72BQ86X60 149 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 OR13H1Q8NG92 308 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 ARHGEF2Q92974 986 aaKnown RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 ISG20Q96AZ6 181 aaKnown RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 FEM1CQ96JP0 617 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 PCDHB18PQ96TA0 734 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 SLC17A9Q9BYT1 436 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 SCUBE2Q9NQ36 999 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 TMEM248Q9NWD8 314 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 DNAI1Q9UI46 699 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 HS3ST3A1Q9Y663 406 aa16.38■□□□□ 0.21
CLN3-229ENST00000567963 TDRD6O60522 2096 aaKnown RBP16.38■□□□□ 0.21
CLN3-229ENST00000567963 MYLKQ15746 1914 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 TRIM38O00635 465 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 SIGLEC6O43699 453 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 PAK4O96013 591 aaPredicted RBP16.37■□□□□ 0.21
CLN3-229ENST00000567963 KRT3P12035 628 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 HDAC4P56524 1084 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 GSCP56915 257 aaPredicted RBP16.37■□□□□ 0.21
CLN3-229ENST00000567963 RPS21P63220 83 aaKnown RBP16.37■□□□□ 0.21
CLN3-229ENST00000567963 HES3Q5TGS1 186 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 KIAA1161Q6NSJ0 714 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 GCNT7Q6ZNI0 430 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 SLC22A18ASQ8N1D0 253 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 FAM174AQ8TBP5 190 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 BMFQ96LC9 184 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 CALN1Q9BXU9 219 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 TM6SF2Q9BZW4 377 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 MAGEH1Q9H213 219 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 UCKL1Q9NWZ5 548 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 NEU3Q9UQ49 428 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 FADS3Q9Y5Q0 445 aa16.37■□□□□ 0.21
CLN3-229ENST00000567963 AP1G1O43747 822 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 LRIG2O94898 1065 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 PLEKP08567 350 aaPredicted RBP16.36■□□□□ 0.21
CLN3-229ENST00000567963 RFC1P35251 1148 aaPredicted RBP16.36■□□□□ 0.21
CLN3-229ENST00000567963 NSFP46459 744 aaKnown RBP16.36■□□□□ 0.21
CLN3-229ENST00000567963 COPB1P53618 953 aaKnown RBP16.36■□□□□ 0.21
CLN3-229ENST00000567963 GEMIN4P57678 1058 aaKnown RBP16.36■□□□□ 0.21
CLN3-229ENST00000567963 MAPK8IP2Q13387 824 aaPredicted RBP16.36■□□□□ 0.21
CLN3-229ENST00000567963 FGL2Q14314 439 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 Q6ZSR6 202 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 PDZD3Q86UT5 571 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 CCDC185Q8N715 623 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 OR4C6Q8NH72 309 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 FAM172AQ8WUF8 416 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 IFT43Q96FT9 208 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 ZDHHC6Q9H6R6 413 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 ADAM22Q9P0K1 906 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 HPCAL4Q9UM19 191 aa16.36■□□□□ 0.21
CLN3-229ENST00000567963 A0A087WV48 116 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 A6NNZ2 444 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 PIAS2O75928 621 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 GIMD1P0DJR0 217 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 GKP32189 559 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 POLD3Q15054 466 aaPredicted RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 SYCP1Q15431 976 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 CLEC16AQ2KHT3 1053 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 HS1BP3Q53T59 392 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms