RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ELK3P41970 407 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 GRIA3P42263 894 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 FLT3LGP49771 235 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 HNRNPFP52597 415 aaKnown RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 SP3Q02447 781 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ORC1Q13415 861 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 IRF5Q13568 498 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 RAB39AQ14964 217 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 FAM187BQ17R55 369 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PGS1Q32NB8 556 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 WDR45BQ5MNZ6 344 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ZNF618Q5T7W0 954 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 CTAGE3PQ8IX95 158 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PPIL6Q8IXY8 311 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ZNF786Q8N393 782 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ZSCAN18Q8TBC5 510 aaPredicted RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 RNF38Q9H0F5 515 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PCDH12Q9NPG4 1184 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PNPOQ9NVS9 261 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 SAE1Q9UBE0 346 aaPredicted RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 B3GNT3Q9Y2A9 372 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 CASP8AP2Q9UKL3 1982 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 LOC105371267A0A1B0GV96 52 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 KBTBD13C9JR72 458 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CFLARO15519 480 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 PSTPIP1O43586 416 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CD19P15391 556 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CDH8P55286 799 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 PRKCZQ05513 592 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 ZNF667Q5HYK9 610 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CYP4A22Q5TCH4 519 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 C16orf46Q6P387 395 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 MFSD7Q6UXD7 560 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 DSG4Q86SJ6 1040 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 ELMOD1Q8N336 334 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CLIP4Q8N3C7 705 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 PPM1NQ8N819 430 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 ATP6V0D2Q8N8Y2 350 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 NAT8LQ8N9F0 302 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 TMEM35BQ8NCS4 154 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 EXD1Q8NHP7 514 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 FEZF2Q8TBJ5 459 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CALML6Q8TD86 181 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 ACSF2Q96CM8 615 aaPredicted RBP13.49□□□□□ -0.25
CLK3-206ENST00000562078 MCEEQ96PE7 176 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 SNX25Q9H3E2 840 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 PCDH9Q9HC56 1237 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLK3-206ENST00000562078 AP4S1Q9Y587 144 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CALB1P05937 261 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 GNAO1P09471 354 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 IDUAP35475 653 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 NR4A2P43354 598 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 HTRA3P83110 453 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 POU5F1BQ06416 359 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 NFATC3Q12968 1075 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 DNASE1L3Q13609 305 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 GRIK4Q16099 956 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 DNAJC24Q6P3W2 148 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CYP2U1Q7Z449 544 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 PDCD6IPQ8WUM4 868 aaKnown RBP13.49□□□□□ -0.25
CLK3-206ENST00000562078 ZNF641Q96N77 438 aaPredicted RBP13.49□□□□□ -0.25
CLK3-206ENST00000562078 CNOT11Q9UKZ1 510 aaKnown RBP13.49□□□□□ -0.25
CLK3-206ENST00000562078 ATP11BQ9Y2G3 1177 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 SLC30A1Q9Y6M5 507 aa13.49□□□□□ -0.25
CLK3-206ENST00000562078 CXorf49A8MYA2 514 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 E7ESA3 106 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 STX16-NPEPL1H3BU86 382 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 CLOCKO15516 846 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 RFPL1O75677 317 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 TCN1P20061 433 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 YWHAEP62258 255 aaKnown RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 ZNF252P-AS1Q0IIN9 211 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 CEACAM7Q14002 265 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 PPM1LQ5SGD2 360 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 TEDDM1Q5T9Z0 273 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 TTC39BQ5VTQ0 682 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 MFSD14CQ5VZR4 134 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 SLC43A3Q8NBI5 491 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 FAM156AQ8NDB6 213 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 ZNF420Q8TAQ5 688 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 PPP1R13LQ8WUF5 828 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 ATP6V1E2Q96A05 226 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 LENG8Q96PV6 779 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 RTKNQ9BST9 563 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 AP5M1Q9H0R1 490 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 SDCBP2Q9H190 292 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 TP63Q9H3D4 680 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 DNMT3BQ9UBC3 853 aaKnown RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 HMGXB4Q9UGU5 601 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 XPO7Q9UIA9 1087 aaKnown RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 MOSPD1Q9UJG1 213 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 GPSM3Q9Y4H4 160 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 TRAF6Q9Y4K3 522 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 DNAH12Q6ZR08 3092 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 PIK3R2O00459 728 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 SNAP91O60641 907 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 JRKO75564 520 aa13.48□□□□□ -0.25
CLK3-206ENST00000562078 SEC24DO94855 1032 aaPredicted RBP13.48□□□□□ -0.25
CLK3-206ENST00000562078 KCNH1O95259 989 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms