RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TCAF2A6NFQ2 919 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 AKAP10O43572 662 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 DLX3O60479 287 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 PPARGP37231 505 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 IREB2P48200 963 aaKnown RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 SEPT6Q14141 434 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 PIGZQ86VD9 579 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CLVS1Q8IUQ0 354 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 MFSD6LQ8IWD5 586 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 LSMEM2Q8N112 164 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 LPGAT1Q92604 370 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 SIK2Q9H0K1 926 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CDHR5Q9HBB8 845 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 BFARQ9NZS9 450 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 NUDT5Q9UKK9 219 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 EEF2KO00418 725 aaKnown RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 ERCC2P18074 760 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 NR4A1P22736 598 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 PTPN3P26045 913 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 MAGEA6P43360 314 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CHRNA4P43681 627 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CTBSQ01459 385 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CSHL1Q14406 222 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 PRPSAP1Q14558 356 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 PLA2G4EQ3MJ16 856 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 ZNF789Q5FWF6 425 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 STEAP4Q687X5 459 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CNSTQ6PJW8 725 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 RYBPQ8N488 228 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 IPMKQ8NFU5 416 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 MIPOL1Q8TD10 442 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 BTBD9Q96Q07 612 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 SERPINI1Q99574 410 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 MLPHQ9BV36 600 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 Q9H521 79 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 OXSMQ9NWU1 459 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 MORF4L1Q9UBU8 362 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CEPT1Q9Y6K0 416 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 AHSGP02765 367 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CD68P34810 354 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 GRIA3P42263 894 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CDH13P55290 713 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 C1QTNF8P60827 252 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CAPRIN1Q14444 709 aaKnown RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 PCSK7Q16549 785 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 C16orf89Q6UX73 402 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 TMEM110Q86TL2 294 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 HERC6Q8IVU3 1022 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 SH3RF2Q8TEC5 729 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CDCA5Q96FF9 252 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 OTUD5Q96G74 571 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 CPNE1Q99829 537 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 FRMD8Q9BZ67 464 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 NAA50Q9GZZ1 169 aaKnown RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 C2orf40Q9H1Z8 148 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 ARMC7Q9H6L4 198 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 HOXC10Q9NYD6 342 aa12.51□□□□□ -0.41
LDLR-205ENST00000557933 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.51□□□□□ -0.416e-8■□□□□ 8.2
LDLR-205ENST00000557933 C6orf203Q9P0P8 240 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 PPP6CO00743 305 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 SOCS2O14508 198 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 IL18RAPO95256 599 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 ABCD1P33897 745 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 EMP3P54852 163 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 PSME3P61289 254 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 XKR5Q6UX68 686 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 CENPLQ8N0S6 344 aaPredicted RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 TMEM102Q8N9M5 508 aaPredicted RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 RNF39Q9H2S5 420 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 TUT1Q9H6E5 874 aaKnown RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 EVLQ9UI08 416 aaPredicted RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 KCNH4Q9UQ05 1017 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 KPNA7A9QM74 516 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 DENRO43583 198 aaKnown RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 PMPCBO75439 489 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 PGK1P00558 417 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 ZNF26P17031 533 aaPredicted RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 MAP3K7CLP57077 242 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 GRM1Q13255 1194 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 ESRP1Q6NXG1 681 aaKnown RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 LBX2Q6XYB7 198 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 FAM35AQ86V20 835 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 TXNDC5Q8NBS9 432 aaKnown RBP12.5□□□□□ -0.41
LDLR-205ENST00000557933 ACMSDQ8TDX5 336 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 CANT1Q8WVQ1 401 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 POMKQ9H5K3 350 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 DSEQ9UL01 958 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 AP4S1Q9Y587 144 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 USP3Q9Y6I4 520 aa12.5□□□□□ -0.41
LDLR-205ENST00000557933 ARHGAP10A1A4S6 786 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 CXCL11O14625 94 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 XPOTO43592 962 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 SLC35E2BP0CK96 405 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 NCAM1P13591 858 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 DESP17661 470 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 CNTFP26441 200 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 ICAM3P32942 547 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 CSE1LP55060 971 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 PLIN5Q00G26 463 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms