RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 RSRC1Q96IZ7 334 aaKnown RBP18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 C8orf48Q96LL4 319 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 FAM161BQ96MY7 647 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 FSD1LQ9BXM9 530 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 TASP1Q9H6P5 420 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 OXSMQ9NWU1 459 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 GMIPQ9P107 970 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 HSPA4LO95757 839 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 PEX11BO96011 259 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 SLC35E2BP0CK96 405 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 VARS2Q5ST30 1063 aaKnown RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 TFAP2DQ7Z6R9 452 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 ARHGAP24Q8N264 748 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 FUBP3Q96I24 572 aaKnown RBP eCLIP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 CLPTM1LQ96KA5 538 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 LBHD1Q9BQE6 289 aaPredicted RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 GATA5Q9BWX5 397 aaPredicted RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 ACE2Q9BYF1 805 aaPredicted RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 CDH19Q9H159 772 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 FAM96AQ9H5X1 160 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 ACSS2Q9NR19 701 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 TLK1Q9UKI8 766 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 ANKRD6Q9Y2G4 727 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 MEI4A8MW99 385 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 CABYRO75952 493 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 KLHL2O95198 593 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 CPOXP36551 454 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 TBX4P57082 545 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 ZNF460Q14592 562 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 RCN1Q15293 331 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 CNGA3Q16281 694 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 NFE2Q16621 373 aaPredicted RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 MS4A13Q5J8X5 152 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 ATAD1Q8NBU5 361 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 C1orf21Q9H246 121 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 FBXO44Q9H4M3 255 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 COG4Q9H9E3 785 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 MRM3Q9HC36 420 aaKnown RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 PRDM5Q9NQX1 630 aaPredicted RBP18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 TREX1Q9NSU2 369 aa18.78■□□□□ 0.6
PRPF40B-208ENST00000548436 TMEM114B3SHH9 223 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 TM7SF2O76062 418 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 TBX18O95935 607 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 GLRBP48167 497 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 PCSK7Q16549 785 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 ALFQ53S48 1182 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 LRRC49Q8IUZ0 686 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 CEP97Q8IW35 865 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 SCUBE1Q8IWY4 988 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 CENPLQ8N0S6 344 aaPredicted RBP18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 POU5F2Q8N7G0 328 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 PTCD2Q8WV60 388 aaKnown RBP18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 KCTD4Q8WVF5 259 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 HMCESQ96FZ2 354 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 THTPAQ9BU02 230 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 RUVBL2Q9Y230 463 aaKnown RBP18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 LRRC42Q9Y546 428 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 CDY1Q9Y6F8 540 aa18.77■□□□□ 0.6
PRPF40B-208ENST00000548436 J3KR12 359 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 TADA2AO75478 443 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 SOAT2O75908 522 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 NEBLO76041 1014 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 CNTN5O94779 1100 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 PSMG1O95456 288 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 SLC1A2P43004 574 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 WNT3AP56704 352 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 EFEMP1Q12805 493 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 SLC12A1Q13621 1099 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 THOC5Q13769 683 aaKnown RBP18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 DNAL1Q4LDG9 190 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 KDELC1Q6UW63 502 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 EPGNQ6UW88 154 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 ZYG11AQ6WRX3 759 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 ULK2Q8IYT8 1036 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 UMODL1-AS1Q8N2C9 162 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 MAPK15Q8TD08 544 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 B3GALT6Q96L58 329 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 PPP1R2P1Q96PQ5 205 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 PCDHB5Q9Y5E4 795 aa18.77■□□□□ 0.59
PRPF40B-208ENST00000548436 APOA4P06727 396 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 CHRNGP07510 517 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 HAPLN1P10915 354 aaPredicted RBP18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 SLC2A3P11169 496 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 MYL4P12829 197 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 MXRA7P84157 204 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 PSMD5Q16401 504 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 UGP2Q16851 508 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 SLC9B1Q4ZJI4 515 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 TDRD5Q8NAT2 981 aaKnown RBP18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 AGR3Q8TD06 166 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 SREK1Q8WXA9 508 aaKnown RBP18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 GLT1D1Q96MS3 346 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 FAM193BQ96PV7 902 aaPredicted RBP18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 SLC25A51Q9H1U9 297 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 MAN1C1Q9NR34 630 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 IL37Q9NZH6 218 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 FNIP2Q9P278 1114 aa18.76■□□□□ 0.59
PRPF40B-208ENST00000548436 FAM95CA0A1B0GW59 222 aa18.75■□□□□ 0.59
PRPF40B-208ENST00000548436 H2AFYO75367 372 aaKnown RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms