RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TRIM60Q495X7 471 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 CRELD2Q6UXH1 353 aaPredicted RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 SLC39A5Q6ZMH5 540 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 FSTL5Q8N475 847 aaPredicted RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.35□□□□□ -1.71
CD44-235ENST00000532339 ATP11CQ8NB49 1132 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 MBD3L2Q8NHZ7 208 aaPredicted RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 MPLKIPQ8TAP9 179 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 TRIB2Q92519 343 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 FAM227BQ96M60 508 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 HNRNPABQ99729 332 aaKnown RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 NUAK2Q9H093 628 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 UBE2ZQ9H832 354 aaPredicted RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 GJB4Q9NTQ9 266 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 ARL8BQ9NVJ2 186 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 UBN2Q6ZU65 1347 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 CEMIPQ8WUJ3 1361 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 BRWD1Q9NSI6 2320 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 TEP1Q99973 2627 aaKnown RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 PLXNA1Q9UIW2 1896 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 OTOFQ9HC10 1997 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.34□□□□□ -1.71
CD44-235ENST00000532339 H3BNX3 289 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 PRAMEF2O60811 474 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 WDR47O94967 919 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 ANXA2P07355 339 aaKnown RBP4.34□□□□□ -1.71
CD44-235ENST00000532339 TMIGD3P0DMS9 266 aaPredicted RBP4.34□□□□□ -1.71
CD44-235ENST00000532339 CBSLP0DN79 551 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 GPTP24298 496 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 CCKBRP32239 447 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 CBSP35520 551 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 CHKAP35790 457 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 GRK6P43250 576 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 CPA2P48052 419 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 VCPP55072 806 aaKnown RBP4.34□□□□□ -1.71
CD44-235ENST00000532339 KPNB1Q14974 876 aaKnown RBP4.34□□□□□ -1.71
CD44-235ENST00000532339 ARL13BQ3SXY8 428 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 TLDC1Q6P9B6 456 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 PPP1R42Q7Z4L9 355 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 P3H2Q8IVL5 708 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 KIAA2013Q8IYS2 634 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 IQCDQ96DY2 449 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 STK33Q9BYT3 514 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 AGO4Q9HCK5 861 aaKnown RBP4.34□□□□□ -1.71
CD44-235ENST00000532339 SEMA5BQ9P283 1151 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 MUTYHQ9UIF7 546 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 SQORQ9Y6N5 450 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 KMT2EQ8IZD2 1858 aa4.34□□□□□ -1.71
CD44-235ENST00000532339 ZZEF1O43149 2961 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 PSME4Q14997 1843 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 SH3TC1Q8TE82 1336 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 CLCA1A8K7I4 914 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 PLA2G6O60733 806 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 TULP3O75386 442 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 CLTBP09497 229 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 PSG1P11464 419 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 KCNA5P22460 613 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 EEF1GP26641 437 aaKnown RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 PDIA3P30101 505 aaKnown RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 CCKARP32238 428 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 GALNSP34059 522 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 HTR7P34969 479 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 DGKQP52824 942 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 WDR5P61964 334 aaKnown RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 ICA1Q05084 483 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 PPATQ06203 517 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 GALNT1Q10472 559 aaPredicted RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 MTX1Q13505 466 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 DNASE1L3Q13609 305 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 STARD3Q14849 445 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 PUM3Q15397 648 aaKnown RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 DLGAP5Q15398 846 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 ELF2Q15723 593 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 PDCD2Q16342 344 aaPredicted RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 PARP10Q53GL7 1025 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 GRHL2Q6ISB3 625 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 LDHAL6AQ6ZMR3 332 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 RNF44Q7L0R7 432 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 ADHFE1Q8IWW8 467 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 SYTL1Q8IYJ3 562 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 ZNF34Q8IZ26 560 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 CPXCR1Q8N123 301 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 ZNF548Q8NEK5 533 aaPredicted RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 BCAS4Q8TDM0 211 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 LPAR1Q92633 364 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 C18orf8Q96DM3 657 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 SLC25A32Q9H2D1 315 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 HEYLQ9NQ87 328 aaPredicted RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 VPS45Q9NRW7 570 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 TBC1D23Q9NUY8 699 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 ZNF580Q9UK33 172 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 GJD2Q9UKL4 321 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.33□□□□□ -1.72
CD44-235ENST00000532339 PCDHGB3Q9Y5G1 929 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 USP16Q9Y5T5 823 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 DGKBQ9Y6T7 804 aa4.33□□□□□ -1.72
CD44-235ENST00000532339 MAP3K15Q6ZN16 1313 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 IGKV2D-30A0A075B6S6 120 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 FFAR2O15552 330 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms