RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 MYL4P12829 197 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ATF2P15336 505 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 STMN1P16949 149 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 JUNBP17275 347 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 TYK2P29597 1187 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 LRPAP1P30533 357 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 SHMT1P34896 483 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 HTR7P34969 479 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 HNF1BP35680 557 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 DDOSTP39656 456 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 OPRL1P41146 370 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 MAGEA4P43358 317 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ABCG1P45844 678 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 LEPRP48357 1165 aaKnown RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 NKX2-5P52952 324 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 EPHB1P54762 984 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 SLC12A2P55011 1212 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 POU6F2P78424 691 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 DAB2P98082 770 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PLAURQ03405 335 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 NFIAQ12857 509 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ILF2Q12905 390 aaKnown RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 SNTA1Q13424 505 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TOP3AQ13472 1001 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 CTTNQ14247 550 aaKnown RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 GK3PQ14409 553 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 RAB39AQ14964 217 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TCEAL1Q15170 157 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 YIF1BQ5BJH7 314 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 GARNL3Q5VVW2 1013 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TTC33Q6PID6 262 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 CYP20A1Q6UW02 462 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 RANBP10Q6VN20 620 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PIK3AP1Q6ZUJ8 805 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TMEM26Q6ZUK4 368 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TOM1L2Q6ZVM7 507 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 DSG4Q86SJ6 1040 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 FAM124AQ86V42 546 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 SLC22A16Q86VW1 577 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 GALNT12Q8IXK2 581 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PALM2Q8IXS6 379 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TBC1D21Q8IYX1 336 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 CMTR1Q8N1G2 835 aaKnown RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 ZCCHC7Q8N3Z6 543 aaKnown RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 PACRGLQ8N7B6 248 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 KCT2Q8NC54 265 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 BEST2Q8NFU1 509 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ABHD11Q8NFV4 315 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 FBXO27Q8NI29 283 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 SLC9A6Q92581 669 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ARHGEF26Q96DR7 871 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 AK8Q96MA6 479 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ZNF512Q96ME7 567 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 ASB2Q96Q27 587 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 C7orf25Q9BPX7 421 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 WACQ9BTA9 647 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 MCMBPQ9BTE3 642 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 TTPALQ9BTX7 342 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 KIFC1Q9BW19 673 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 APOL5Q9BWW9 433 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 HEMGNQ9BXL5 484 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 RNF26Q9BY78 433 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 PITHD1Q9GZP4 211 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 NIF3L1Q9GZT8 377 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 ABCG4Q9H172 646 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 GANQ9H2C0 597 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 C8orf33Q9H7E9 229 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 ATP13A3Q9H7F0 1226 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PLEKHA5Q9HAU0 1116 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 COPRSQ9NQ92 184 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 FBXO8Q9NRD0 319 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 FAM105AQ9NUU6 356 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 OLAHQ9NV23 265 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PAQR5Q9NXK6 330 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 ARMCX1Q9P291 453 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 KLQ9UEF7 1012 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 VPS28Q9UK41 221 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PCDHGB4Q9UN71 923 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 DIMT1Q9UNQ2 313 aaKnown RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 VWA7Q9Y334 891 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 UGT2A1Q9Y4X1 527 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 RIPK3Q9Y572 518 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 PCDHGB5Q9Y5G0 923 aa5.9□□□□□ -1.46
CD44-225ENST00000527326 KLF2Q9Y5W3 355 aaPredicted RBP5.9□□□□□ -1.46
CD44-225ENST00000527326 NALCNQ8IZF0 1738 aa5.9□□□□□ -1.47
CD44-225ENST00000527326 GSTTP1A0A1W2PQM5 241 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 GTPBP10A4D1E9 387 aaKnown RBP5.89□□□□□ -1.47
CD44-225ENST00000527326 PI4KAP2A4QPH2 592 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 ANKRD63C9JTQ0 380 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 PRSS44E7EML9 344 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 H3BMM5 538 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 GRM8O00222 908 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 BTN3A1O00481 513 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 RAD51BO15315 384 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 SPOPO43791 374 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 DNAJB5O75953 348 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 TRIM16O95361 564 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 CPNE6O95741 557 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 NDST3O95803 873 aa5.89□□□□□ -1.47
CD44-225ENST00000527326 DHRS4L1P0CG22 281 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms