RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-222	ENST00000520948	HS3ST2	Q9Y278	367 aa		18.52	■□□□□ 0.56
VEGFA-222	ENST00000520948	CHD6	Q8TD26	2715 aa		18.52	■□□□□ 0.56
VEGFA-222	ENST00000520948	PCDH15	Q96QU1	1955 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	CCDC66	A2RUB6	948 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	LRRD1	A4D1F6	860 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	KDELR3	O43731	214 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	HYAL3	O43820	417 aa	Predicted RBP	18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	C7	P10643	843 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	PRKCH	P24723	683 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	ATXN3	P54252	364 aa	Predicted RBP	18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	ARF5	P84085	180 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC20A2	Q08357	652 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	PAFAH1B3	Q15102	231 aa	Known RBP	18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	SPDYC	Q5MJ68	293 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	PEAR1	Q5VY43	1037 aa	Predicted RBP	18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	SDE2	Q6IQ49	451 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	MFSD7	Q6UXD7	560 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	TP53INP2	Q8IXH6	220 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	RCOR2	Q8IZ40	523 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	OR2I1P	Q8NGU4	316 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	EXD1	Q8NHP7	514 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	RNF25	Q96BH1	459 aa	Predicted RBP	18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	HMCES	Q96FZ2	354 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	SPON2	Q9BUD6	331 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC6A17	Q9H1V8	727 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC32A1	Q9H598	525 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	PRDM16	Q9HAZ2	1276 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	ATP13A1	Q9HD20	1204 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	CD93	Q9NPY3	652 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	CYP8B1	Q9UNU6	501 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	RAD54B	Q9Y620	910 aa		18.51	■□□□□ 0.55
VEGFA-222	ENST00000520948	CKAP5	Q14008	2032 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	ASPM	Q8IZT6	3477 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	NYNRIN	Q9P2P1	1898 aa	Known RBP	18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	IGHV1OR15-9	A0A0B4J2B8	117 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	DDX3Y	O15523	660 aa	Known RBP	18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	ATP9B	O43861	1147 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	ZRANB2	O95218	330 aa	Known RBP eCLIP	18.5	■□□□□ 0.55	4e-17	■■□□□ 11.4
VEGFA-222	ENST00000520948	MT-CO1	P00395	513 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	KRT1	P04264	644 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	NDUFV2	P19404	249 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	DPP6	P42658	865 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	CDKN2B	P42772	138 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	STK19	P49842	368 aa	Predicted RBP	18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	ZNF33A	Q06730	810 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	ZFYVE27	Q5T4F4	411 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	NCBP2-AS2	Q69YL0	99 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC9A4	Q6AI14	798 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	TMCO3	Q6UWJ1	677 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC36A4	Q6YBV0	504 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	PEX26	Q7Z412	305 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	SH2D3C	Q8N5H7	860 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	FRS2	Q8WU20	508 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	ALG3	Q92685	438 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	GATA6	Q92908	595 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	HES6	Q96HZ4	224 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	CELF6	Q96J87	481 aa	Known RBP	18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	SUN2	Q9UH99	717 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC6A14	Q9UN76	642 aa		18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	18.5	■□□□□ 0.55
VEGFA-222	ENST00000520948	TTC34	A8MYJ7	566 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	MIF4GD	A9UHW6	222 aa	Known RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	CBX4	O00257	560 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	FTCD	O95954	541 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	SRC	P12931	536 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	HLA-E	P13747	358 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	HOXD12	P35452	270 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	PAPOLA	P51003	745 aa	Known RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	ST8SIA6	P61647	398 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	SIM1	P81133	766 aa	Predicted RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	CAMK2G	Q13555	558 aa	Predicted RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	DUOXA1	Q1HG43	343 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	HNRNPA1L2	Q32P51	320 aa	Known RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	FNDC3B	Q53EP0	1204 aa	Known RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	SERPINA13P	Q6UXR4	307 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	SPOCD1	Q6ZMY3	1216 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	PIP4P1	Q86T03	277 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC41A1	Q8IVJ1	513 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	HDDC3	Q8N4P3	179 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	PLD5	Q8N7P1	536 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	KDF1	Q8NAX2	398 aa	Predicted RBP	18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	PTPRN2	Q92932	1015 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	HSPA12B	Q96MM6	686 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC25A13	Q9UJS0	675 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	PYCARD	Q9ULZ3	195 aa		18.49	■□□□□ 0.55
VEGFA-222	ENST00000520948	TARSL2	A2RTX5	802 aa	Known RBP	18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	ARHGAP42	A6NI28	874 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	ZBTB24	O43167	697 aa	Predicted RBP	18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	ZSCAN12	O43309	604 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	SMAD6	O43541	496 aa	Known RBP	18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	ZNF821	O75541	412 aa	Predicted RBP	18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	EPHX1	P07099	455 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	SERPINF2	P08697	491 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	NNMT	P40261	264 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	RWDD2B	P57060	319 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	COPS2	P61201	443 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	SLC10A2	Q12908	348 aa	Predicted RBP	18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	MEI1	Q5TIA1	1274 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	RETSAT	Q6NUM9	610 aa		18.48	■□□□□ 0.55
VEGFA-222	ENST00000520948	LINGO4	Q6UY18	593 aa		18.48	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms