RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 GBF1Q92538 1859 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 PEX13Q92968 403 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 MYEOVQ96EZ4 313 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 SERAC1Q96JX3 654 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 PRICKLE1Q96MT3 831 aaPredicted RBP8.5□□□□□ -1.05
RNF4-220ENST00000513578 PSKH2Q96QS6 385 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 MCMBPQ9BTE3 642 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 KIF9Q9HAQ2 790 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 AGO1Q9UL18 857 aaKnown RBP8.5□□□□□ -1.05
RNF4-220ENST00000513578 RIMKLBQ9ULI2 386 aa8.5□□□□□ -1.05
RNF4-220ENST00000513578 ZFP37Q9Y6Q3 630 aaPredicted RBP8.5□□□□□ -1.05
RNF4-220ENST00000513578 NOTCH4Q99466 2003 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 COL6A3P12111 3177 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 C2orf78A6NCI8 922 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 F5H423 210 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 LPXNO60711 386 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 USP12O75317 370 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 SPAG7O75391 227 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MT-CYBP00156 380 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 LRG1P02750 347 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MBL2P11226 248 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 HDCP19113 662 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 TAC1P20366 129 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 DNAJB1P25685 340 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 DDX6P26196 483 aaKnown RBP eCLIP8.49□□□□□ -1.05
RNF4-220ENST00000513578 HOXA9P31269 272 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 CRHR1P34998 444 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 SPRP35270 261 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 ACVRL1P37023 503 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 CCT5P48643 541 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 WNT3AP56704 352 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 CRADDP78560 199 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 ZNF177Q13360 481 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 MSLNQ13421 630 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 LAMB3Q13751 1172 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 SLC1A5Q15758 541 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 INSCQ1MX18 579 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 RALGPS1Q5JS13 557 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MPP7Q5T2T1 576 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 CERCAMQ5T4B2 595 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 TEDDM1Q5T9Z0 273 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 HHATQ5VTY9 493 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 KIAA0930Q6ICG6 404 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 PDE12Q6L8Q7 609 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 LVRNQ6Q4G3 990 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 HTR3DQ70Z44 454 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 NLRP9Q7RTR0 991 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 LMNTD2Q8IXW0 634 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 ELMOD1Q8N336 334 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MRPL43Q8N983 215 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 LEMD2Q8NC56 503 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 HJURPQ8NCD3 748 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 KREMEN2Q8NCW0 462 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 PPHLN1Q8NEY8 458 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 IPMKQ8NFU5 416 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 SPATA22Q8NHS9 363 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 TCP10LQ8TDR4 215 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MRPS31Q92665 395 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 ZNF669Q96BR6 464 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 MRRFQ96E11 262 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 SEC16BQ96JE7 1060 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 FEM1CQ96JP0 617 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 CABS1Q96KC9 395 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 RBBP8Q99708 897 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MGME1Q9BQP7 344 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 TRIM56Q9BRZ2 755 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 ZBED2Q9BTP6 218 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 FICDQ9BVA6 458 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 POLR1EQ9GZS1 481 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 FAM107BQ9H098 131 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 MTIF3Q9H2K0 278 aaKnown RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 GKN1Q9NS71 199 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 TREX1Q9NSU2 369 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 CXXC1Q9P0U4 656 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 ZFATQ9P243 1243 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 SEPT3Q9UH03 358 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 ZMYM5Q9UJ78 669 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 TCAF1Q9Y4C2 921 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 SLC4A7Q9Y6M7 1214 aa8.49□□□□□ -1.05
RNF4-220ENST00000513578 NUP210Q8TEM1 1887 aaPredicted RBP8.49□□□□□ -1.05
RNF4-220ENST00000513578 HEATR9A2RTY3 570 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 C2orf71A6NGG8 1288 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 C19orf67A6NJJ6 358 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 TCP11X1B4DZS4 312 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 COPEO14579 308 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 KLF11O14901 512 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 TIMM44O43615 452 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 ATP9BO43861 1147 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 SNX3O60493 162 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 UGT1A9O60656 530 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 PAPLNO95428 1278 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 GLUD1P00367 558 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 C8AP07357 584 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 RHOCP08134 193 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 ITGA2BP08514 1039 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 VIMP08670 466 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 PYGBP11216 843 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 PAMP19021 973 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 EN2P19622 333 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms