RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 SP2Q02086 613 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 BNIP3Q12983 259 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 ATP1A4Q13733 1029 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 FRG1Q14331 258 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 TARBP2Q15633 366 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 LCLAT1Q6UWP7 414 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 KDM1BQ8NB78 822 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 HMGCLL1Q8TB92 370 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 NSUN6Q8TEA1 469 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 ADI1Q9BV57 179 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 TDRD1Q9BXT4 1180 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 DNAI2Q9GZS0 605 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 VRTNQ9H8Y1 702 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 RNF146Q9NTX7 359 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 HACD3Q9P035 362 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 TSPAN16Q9UKR8 245 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 TRIM17Q9Y577 477 aa17.33■□□□□ 0.37
SQSTM1-211ENST00000506690 TRIP11Q15643 1979 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 ZCWPW2A0A1B0GU75 182 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 RNF103O00237 685 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 SDHDO14521 159 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TIMM44O43615 452 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 SNAP91O60641 907 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 RAD17O75943 681 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 ESRRBO95718 433 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TFE3P19532 575 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 PSMB4P28070 264 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TMEM26Q6ZUK4 368 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TMEM135Q86UB9 458 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 RNF169Q8NCN4 708 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 CXorf38Q8TB03 319 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TRUB1Q8WWH5 349 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TMEM39BQ9GZU3 492 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 CCDC68Q9H2F9 335 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 TASP1Q9H6P5 420 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 LRRC40Q9H9A6 602 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 RMI1Q9H9A7 625 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 CYP3A43Q9HB55 503 aa17.33■□□□□ 0.36
SQSTM1-211ENST00000506690 GJA8P48165 433 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 RGS7P49802 495 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 OSTNP61366 133 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 MERTKQ12866 999 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 SLC36A3Q495N2 470 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 REP15Q6BDI9 236 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 CAMK1DQ8IU85 385 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 COLGALT2Q8IYK4 626 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 ZNF669Q96BR6 464 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 KCTD15Q96SI1 283 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 FTHL17Q9BXU8 183 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 NAA50Q9GZZ1 169 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 ZNF277Q9NRM2 450 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 TMEM9Q9P0T7 183 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 TMEM181Q9P2C4 612 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 ERGIC3Q9Y282 383 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 CTDP1Q9Y5B0 961 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 SLC30A1Q9Y6M5 507 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 TARM1B6A8C7 271 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 PRKCBP05771 671 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 DPEP1P16444 411 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 SLC6A3Q01959 620 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 CBR4Q8N4T8 237 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 STYXQ8WUJ0 223 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 CANT1Q8WVQ1 401 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 ACDQ96AP0 544 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 AP4E1Q9UPM8 1137 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 B3GNT3Q9Y2A9 372 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 ANKRD6Q9Y2G4 727 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 USP3Q9Y6I4 520 aa17.32■□□□□ 0.36
SQSTM1-211ENST00000506690 DDHD2O94830 711 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 CSE1LP55060 971 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 GRSF1Q12849 480 aaKnown RBP eCLIP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 RGS21Q2M5E4 152 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 PMF1Q6P1K2 205 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 EPHX4Q8IUS5 362 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 ANKRD52Q8NB46 1076 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 FAM110BQ8TC76 370 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 P2RY11Q96G91 374 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 VPS39Q96JC1 886 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 C11orf84Q9BUA3 381 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 POLR1BQ9H9Y6 1135 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 PTPRHQ9HD43 1115 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 CORINQ9Y5Q5 1042 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 IQCA1LA6NCM1 817 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 TRPC5OSA6NMA1 111 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 ZNF839A8K0R7 811 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 TMEM233B4DJY2 109 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 TMED10P49755 219 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 ATXN1P54253 815 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 RPS3AP61247 264 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 MAPRE2Q15555 327 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 DGKDQ16760 1214 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 SAMD4BQ5PRF9 694 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 FAM117BQ6P1L5 589 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 C8orf82Q6P1X6 216 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 MPZL3Q6UWV2 235 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 SIX6OS1Q8N1H7 587 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 SLC15A4Q8N697 577 aa17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 CNDP2Q96KP4 475 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-211ENST00000506690 CEP41Q9BYV8 373 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms