RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 NRF1Q16656 503 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 SYPL2Q5VXT5 272 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 GADL1Q6ZQY3 521 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 GAB3Q8WWW8 586 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 WNT8BQ93098 351 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 SNX25Q9H3E2 840 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 MRPL40Q9NQ50 206 aaKnown RBP12.38□□□□□ -0.43
COL3A1-206ENST00000487010 PIGVQ9NUD9 493 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 TRHDEQ9UKU6 1024 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 STAP1Q9ULZ2 295 aa12.38□□□□□ -0.43
COL3A1-206ENST00000487010 A0A0J9YVX5 310 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 ARHGEF37A1IGU5 675 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TRPC5OSA6NMA1 111 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 KCNU1A8MYU2 1149 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TMEM233B4DJY2 109 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 NCAM2O15394 837 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 NPHS1O60500 1241 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 SLC25A27O95847 323 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 CCDC166P0CW27 439 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 NFKB1P19838 968 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 GABRB3P28472 473 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TKTP29401 623 aaKnown RBP12.37□□□□□ -0.43
COL3A1-206ENST00000487010 ADRA1BP35368 520 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 ZBTB17Q13105 803 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 DCTN2Q13561 401 aaKnown RBP12.37□□□□□ -0.43
COL3A1-206ENST00000487010 VGLL4Q14135 290 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 IKBKEQ14164 716 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 CYTH1Q15438 398 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 GLRA4Q5JXX5 417 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 ZNF618Q5T7W0 954 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TSTD2Q5T7W7 516 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 ZNF772Q68DY9 489 aaPredicted RBP12.37□□□□□ -0.43
COL3A1-206ENST00000487010 GK5Q6ZS86 529 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 SLC41A1Q8IVJ1 513 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 NUP93Q8N1F7 819 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 PELI3Q8N2H9 469 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 CEP70Q8NHQ1 597 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TRPM4Q8TD43 1214 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TOP1MTQ969P6 601 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 GPR78Q96P69 363 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 CCT7Q99832 543 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 OSBPL11Q9BXB4 747 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 SEMA6AQ9H2E6 1030 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 LRRC4Q9HBW1 653 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 XPR1Q9UBH6 696 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 GJD2Q9UKL4 321 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 ACOT9Q9Y305 439 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 TSC2P49815 1807 aa12.37□□□□□ -0.43
COL3A1-206ENST00000487010 E7ENX8 843 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 MTSS1O43312 755 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PFDN1O60925 122 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 H6PDO95479 791 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 AHSGP02765 367 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ALDH3B2P48448 385 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 EMP3P54852 163 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 RHDQ02161 417 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ARHGAP1Q07960 439 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 SEMA3BQ13214 749 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 FBXO47Q5MNV8 452 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ITPRIPL1Q6GPH6 555 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CARM1Q86X55 608 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ERI1Q8IV48 349 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PCDH20Q8N6Y1 951 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 NPWQ8N729 165 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 TRIML2Q8N7C3 387 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CCNYL1Q8N7R7 359 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 LRTOMTQ8WZ04 291 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 NXNL1Q96CM4 212 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 MAML3Q96JK9 1138 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 SLC2A13Q96QE2 648 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 KIFC1Q9BW19 673 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 BRD8Q9H0E9 1235 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PCDHAC1Q9H158 963 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 UNC93B1Q9H1C4 597 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 RNF19AQ9NV58 838 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 DNAAF2Q9NVR5 837 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 RSL24D1Q9UHA3 163 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 COL1A2P08123 1366 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CCDC78A2IDD5 438 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 FZD9O00144 591 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PIRO00625 290 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 TRIM24O15164 1050 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 SPTLC1O15269 473 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CAPN15O75808 1086 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PGK1P00558 417 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 HOXA11P31270 313 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 NDUFV1P49821 464 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CDK9P50750 372 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ADARP55265 1226 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 TPI1P60174 286 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CDH17Q12864 832 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 TRAP1Q12931 704 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 STX5Q13190 355 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PDAP1Q13442 181 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 GJC2Q5T442 439 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 MAMDC4Q6UXC1 1216 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ALKAL1Q6UXT8 129 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 CHSY3Q70JA7 882 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 RNF169Q8NCN4 708 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 DIS3LQ8TF46 1054 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms