RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SIK2Q9H0K1 926 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 TNKS2Q9H2K2 1166 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 SYNDIG1Q9H7V2 258 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 SPASTQ9UBP0 616 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 VPS51Q9UID3 782 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 AHCTF1Q8WYP5 2266 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 PLD2O14939 933 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 CASC3O15234 703 aaKnown RBP17.53■□□□□ 0.4
VIM-204ENST00000478746 SPINT1O43278 529 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 SUV39H1O43463 412 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 MED7O43513 233 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 ENDOD1O94919 500 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 ZNF202O95125 648 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 ITGB2P05107 769 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 RHOCP08134 193 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 SFTPCP11686 197 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 KRT5P13647 590 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 GGCXP38435 758 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 CLCN6P51797 869 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 PMS1P54277 932 aaKnown RBP17.53■□□□□ 0.4
VIM-204ENST00000478746 ADKP55263 362 aaKnown RBP17.53■□□□□ 0.4
VIM-204ENST00000478746 GCNT1Q02742 428 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 EIF2B5Q13144 721 aaKnown RBP17.53■□□□□ 0.4
VIM-204ENST00000478746 LINGO4Q6UY18 593 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 ZNF574Q6ZN55 896 aaPredicted RBP17.53■□□□□ 0.4
VIM-204ENST00000478746 DPY19L3Q6ZPD9 716 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 JAMLQ86YT9 394 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 ARHGEF19Q8IW93 802 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 SLC35F3Q8IY50 421 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 FBXO39Q8N4B4 442 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 LMO3Q8TAP4 145 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 SNX21Q969T3 373 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 LENG8Q96PV6 779 aaPredicted RBP17.53■□□□□ 0.4
VIM-204ENST00000478746 RMND1Q9NWS8 449 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 PADI4Q9UM07 663 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 PCDHGA7Q9Y5G6 932 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 FADS3Q9Y5Q0 445 aa17.53■□□□□ 0.4
VIM-204ENST00000478746 NOBOXO60393 691 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 PAGE1O75459 146 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 GCATO75600 419 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 CNTN5O94779 1100 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 LETM1O95202 739 aaPredicted RBP17.52■□□□□ 0.4
VIM-204ENST00000478746 ANXA6P08133 673 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 GLI1P08151 1106 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 ADRB3P13945 408 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 L1CAMP32004 1257 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 PDX1P52945 283 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 NME3Q13232 169 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 C1orf61Q13536 156 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 MEA1Q16626 185 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 C5orf22Q49AR2 442 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 PRRT3Q5FWE3 981 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 EFHC1Q5JVL4 640 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 TPRG1LQ5T0D9 272 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 ZNF658Q5TYW1 1059 aaPredicted RBP17.52■□□□□ 0.4
VIM-204ENST00000478746 ESRP1Q6NXG1 681 aaKnown RBP17.52■□□□□ 0.4
VIM-204ENST00000478746 ZNF606Q8WXB4 792 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 LIN37Q96GY3 246 aaPredicted RBP17.52■□□□□ 0.4
VIM-204ENST00000478746 CCDC34Q96HJ3 373 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 SLC2A13Q96QE2 648 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 KLF6Q99612 283 aaPredicted RBP17.52■□□□□ 0.4
VIM-204ENST00000478746 CNTN6Q9UQ52 1028 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 WASF2Q9Y6W5 498 aa17.52■□□□□ 0.4
VIM-204ENST00000478746 TRIM49BA6NDI0 452 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 IGLON5A6NGN9 336 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 LMO7DNF2Z398 122 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 NTN3O00634 580 aaPredicted RBP17.51■□□□□ 0.39
VIM-204ENST00000478746 P4HA2O15460 535 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 AP1G1O43747 822 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 ITGB6P18564 788 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 ITGB7P26010 798 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 UGT1A5P35504 534 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 LRRC63Q05C16 580 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 PTK2BQ14289 1009 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 TGIF1Q15583 401 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 COBLL1Q53SF7 1204 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 C22orf39Q6P5X5 142 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 RAB11FIP2Q7L804 512 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 ZSCAN30Q86W11 494 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 RBFAQ8N0V3 343 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 EHBP1Q8NDI1 1231 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 KREMEN1Q96MU8 473 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 C1QTNF2Q9BXJ5 285 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 STRADBQ9C0K7 418 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 TCEAL2Q9H3H9 227 aaPredicted RBP17.51■□□□□ 0.39
VIM-204ENST00000478746 EPB41L5Q9HCM4 733 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 APOBEC3BQ9UH17 382 aaKnown RBP17.51■□□□□ 0.39
VIM-204ENST00000478746 DOPEY2Q9Y3R5 2298 aa17.51■□□□□ 0.39
VIM-204ENST00000478746 A0A0D9SEW6 157 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 TMX2-CTNND1H3BSU7 103 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 YY2O15391 372 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 THAP12O43422 761 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 HSF2BPO75031 334 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 GRAP2O75791 330 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 FAM87AP0C7U9 286 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 DNA2P51530 1060 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 THOP1P52888 689 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 PFN3P60673 137 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 KRT85P78386 507 aa17.5■□□□□ 0.39
VIM-204ENST00000478746 SRSF6Q13247 344 aaKnown RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms