RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 ERMARDQ5T6L9 678 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 ERN2Q76MJ5 926 aaKnown RBP22.16■■□□□ 1.14
COL9A3-211ENST00000477612 PSTKQ8IV42 348 aaKnown RBP22.16■■□□□ 1.14
COL9A3-211ENST00000477612 NAXDQ8IW45 347 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 CASKIN2Q8WXE0 1202 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 VOPP1Q96AW1 172 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 SKA1Q96BD8 255 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 ZNF653Q96CK0 615 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 LRIG1Q96JA1 1093 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 NCAPGQ9BPX3 1015 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 DONSONQ9NYP3 566 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 TPRP12270 2363 aaKnown RBP22.16■■□□□ 1.14
COL9A3-211ENST00000477612 WNT9AO14904 365 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 RNF8O76064 485 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 CCNHP51946 323 aaPredicted RBP22.15■■□□□ 1.14
COL9A3-211ENST00000477612 TDRD12Q587J7 1177 aaKnown RBP22.15■■□□□ 1.14
COL9A3-211ENST00000477612 NAPEPLDQ6IQ20 393 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 LAYNQ6UX15 382 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 CYP4V2Q6ZWL3 525 aaPredicted RBP22.15■■□□□ 1.14
COL9A3-211ENST00000477612 ADAT2Q7Z6V5 191 aaKnown RBP22.15■■□□□ 1.14
COL9A3-211ENST00000477612 GLRX5Q86SX6 157 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 PPP1R16AQ96I34 528 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 PEBP4Q96S96 227 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 TRIM7Q9C029 511 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 DYRK4Q9NR20 520 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 AP4E1Q9UPM8 1137 aa22.15■■□□□ 1.14
COL9A3-211ENST00000477612 LUC7L2Q9Y383 392 aaKnown RBP22.15■■□□□ 1.14
COL9A3-211ENST00000477612 RASA4BC9J798 803 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 RASA4O43374 803 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 PCDHGA12O60330 932 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 GSRP00390 522 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 ITGB7P26010 798 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 MIPP30301 263 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 HNRNPH3P31942 346 aaKnown RBP22.14■■□□□ 1.13
COL9A3-211ENST00000477612 FAM193AP78312 1265 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 PARP15Q460N3 678 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 VPS36Q86VN1 386 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 IQCHQ86VS3 1027 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 MFSD2AQ8NA29 543 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 OR2AP1Q8NGE2 309 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 BAHD1Q8TBE0 780 aaPredicted RBP22.14■■□□□ 1.13
COL9A3-211ENST00000477612 CPLX3Q8WVH0 158 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 SERAC1Q96JX3 654 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 CAMK1GQ96NX5 476 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 SNRNP25Q9BV90 132 aaKnown RBP22.14■■□□□ 1.13
COL9A3-211ENST00000477612 XPO4Q9C0E2 1151 aaKnown RBP22.14■■□□□ 1.13
COL9A3-211ENST00000477612 HECAQ9UBI9 543 aaPredicted RBP22.14■■□□□ 1.13
COL9A3-211ENST00000477612 PCOLCE2Q9UKZ9 415 aa22.14■■□□□ 1.13
COL9A3-211ENST00000477612 H0Y8X5 98 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 FLRT2O43155 660 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 RNGTTO60942 597 aaKnown RBP22.13■■□□□ 1.13
COL9A3-211ENST00000477612 LRCH4O75427 683 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 PCK1P35558 622 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 ZNF135P52742 658 aaPredicted RBP22.13■■□□□ 1.13
COL9A3-211ENST00000477612 NDST2P52849 883 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 C21orf59P57076 290 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 TPI1P60174 286 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 SNRPD1P62314 119 aaKnown RBP22.13■■□□□ 1.13
COL9A3-211ENST00000477612 SERINC3Q13530 473 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 SUZ12Q15022 739 aaKnown RBP22.13■■□□□ 1.13
COL9A3-211ENST00000477612 TRIP6Q15654 476 aaKnown RBP22.13■■□□□ 1.13
COL9A3-211ENST00000477612 CA9Q16790 459 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 SLC45A4Q5BKX6 768 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 GRIN3AQ8TCU5 1115 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 KLC2Q9H0B6 622 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 LRRC19Q9H756 370 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 AASDHPPTQ9NRN7 309 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.13■■□□□ 1.13
COL9A3-211ENST00000477612 ACACBO00763 2458 aa22.13■■□□□ 1.13
COL9A3-211ENST00000477612 A0A087X0T9 212 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 A0A1B0GTQ1 180 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 SPAARA0A1B0GVQ0 90 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 TLR4O00206 839 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 POP4O95707 220 aaKnown RBP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 TPM3P06753 285 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 FAM228BP0C875 321 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 CASP14P31944 242 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 HCAR3P49019 387 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 CCT8P50990 548 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 DNA2P51530 1060 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 NEK3P51956 506 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 SIM1P81133 766 aaPredicted RBP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 OVGP1Q12889 678 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 SETMARQ53H47 684 aaPredicted RBP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 HMCESQ96FZ2 354 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 CNTNAP3BQ96NU0 1288 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 ELF4Q99607 663 aaPredicted RBP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 CNTNAP3Q9BZ76 1288 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 TM6SF2Q9BZW4 377 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 DHX35Q9H5Z1 703 aaKnown RBP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 ERVMER34-1Q9H9K5 563 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 GPATCH2LQ9NWQ4 482 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 MYO1AQ9UBC5 1043 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 PCSK1NQ9UHG2 260 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 PCDHB9Q9Y5E1 797 aa22.12■■□□□ 1.13
COL9A3-211ENST00000477612 COL5A1P20908 1838 aaPredicted RBP22.12■■□□□ 1.13
COL9A3-211ENST00000477612 PRAMEF26H0Y7S4 382 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 EEF2KO00418 725 aaKnown RBP22.11■■□□□ 1.13
COL9A3-211ENST00000477612 KCNK3O14649 394 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms