RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 MAP3K21Q5TCX8 1036 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 MFSD14CQ5VZR4 134 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ESRP1Q6NXG1 681 aaKnown RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 PDZD4Q76G19 769 aaPredicted RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 RALGPS2Q86X27 583 aaPredicted RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ABI1Q8IZP0 508 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 PQLC3Q8N755 202 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 TMEM40Q8WWA1 233 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 SLC44A1Q8WWI5 657 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 CMTM5Q96DZ9 223 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 VPS39Q96JC1 886 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 SMIM14Q96QK8 99 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 SERPINI1Q99574 410 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ECSITQ9BQ95 431 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 SLC4A5Q9BY07 1137 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 UPF3AQ9H1J1 476 aaKnown RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 C2orf40Q9H1Z8 148 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 Q9H521 79 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 PRMT7Q9NVM4 692 aaPredicted RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 OR12D3Q9UGF7 316 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 PLLPQ9Y342 182 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 PRKAB1Q9Y478 270 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 DGKBQ9Y6T7 804 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 GPR179Q6PRD1 2367 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ASPMQ8IZT6 3477 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 TTC3P53804 2025 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 MYBPHLA2RUH7 354 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 LRRC14BA6NHZ5 514 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 UPK3BL1B0FP48 263 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 UPK3BL2E5RIL1 263 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 HBP1O60381 514 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 RNASEH1O60930 286 aaKnown RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ITGAVP06756 1048 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 LINC00032P0C843 101 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 COX4I1P13073 169 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 EIF4BP23588 611 aaKnown RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 GCAP28676 217 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 MMP14P50281 582 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 MAP3K10Q02779 954 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 BLMHQ13867 455 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ZRANB3Q5FWF4 1079 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 NOL9Q5SY16 702 aaKnown RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ZBTB49Q6ZSB9 765 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ANKLE1Q8NAG6 615 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 MAGEE2Q8TD90 523 aaPredicted RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 TRPC4APQ8TEL6 797 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 FAXDC2Q96IV6 333 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 FAM167AQ96KS9 214 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 PAAF1Q9BRP4 392 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ACE2Q9BYF1 805 aaPredicted RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 WDR41Q9HAD4 459 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 ZFP14Q9HCL3 533 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 STARD7Q9NQZ5 370 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 BATF3Q9NR55 127 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 THAP1Q9NVV9 213 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 SIX4Q9UIU6 781 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 CPSF3Q9UKF6 684 aaKnown RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 MTF2Q9Y483 593 aaPredicted RBP5.06□□□□□ -1.6
CCDC39-204ENST00000476379 FREM2Q5SZK8 3169 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 LRRC37AA6NMS7 1700 aa5.06□□□□□ -1.6
CCDC39-204ENST00000476379 C1orf232A0A0U1RR37 186 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 A0A1B0GTW7 788 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 SLC15A5A6NIM6 579 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 YJEFN3A6XGL0 299 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 AURKAO14965 403 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 TM9SF1O15321 606 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 MSCO60682 206 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 CHRM5P08912 532 aaPredicted RBP5.05□□□□□ -1.6
CCDC39-204ENST00000476379 PAEPP09466 180 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 ATP6V1B2P21281 511 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 ALDH1A3P47895 512 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 SATB1Q01826 763 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 OCA2Q04671 838 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 CCDC85BQ15834 202 aaPredicted RBP5.05□□□□□ -1.6
CCDC39-204ENST00000476379 SLC5A9Q2M3M2 681 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 C10orf120Q5SQS8 335 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 FSTL4Q6MZW2 842 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 TTC33Q6PID6 262 aaPredicted RBP5.05□□□□□ -1.6
CCDC39-204ENST00000476379 ANKRD23Q86SG2 305 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 DHDDSQ86SQ9 333 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 PIM3Q86V86 326 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 NAT8LQ8N9F0 302 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 URGCPQ8TCY9 931 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 CDK15Q96Q40 435 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 EBNA1BP2Q99848 306 aaKnown RBP5.05□□□□□ -1.6
CCDC39-204ENST00000476379 TM6SF2Q9BZW4 377 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 PAIP1Q9H074 479 aaKnown RBP5.05□□□□□ -1.6
CCDC39-204ENST00000476379 BRD8Q9H0E9 1235 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 MID1IP1Q9NPA3 183 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 VPS45Q9NRW7 570 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 DTLQ9NZJ0 730 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 ZNHIT2Q9UHR6 403 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 KCTD3Q9Y597 815 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 ACTL7AQ9Y615 435 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 AP4B1Q9Y6B7 739 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 TET1Q8NFU7 2136 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 C15orf38-AP3S2A0A0A6YYH1 394 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 CCDC189A1A4V9 331 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 H3BMM5 538 aa5.05□□□□□ -1.6
CCDC39-204ENST00000476379 CBX4O00257 560 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms