RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CLEC16AQ2KHT3 1053 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 CARD16Q5EG05 197 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 C19orf48Q6RUI8 117 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 SASS6Q6UVJ0 657 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 NLRP14Q86W24 1093 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 TMPRSS12Q86WS5 348 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 PHF13Q86YI8 300 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 NEK11Q8NG66 645 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 TSC1Q92574 1164 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 KLK6Q92876 244 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 COL26A1Q96A83 441 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 PCMTD1Q96MG8 357 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 GBP4Q96PP9 640 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 MYOCQ99972 504 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 TMEM248Q9NWD8 314 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 ADAM22Q9P0K1 906 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 ZFR2Q9UPR6 939 aaKnown RBP16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 TRABD2BA6NFA1 517 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FAM72CH0Y354 149 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 PCDH8O95206 1070 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 CD160O95971 181 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 THEGLP0DJG4 465 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 KRT3P12035 628 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 HNRNPA2B1P22626 353 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 ITGB7P26010 798 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 L1CAMP32004 1257 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 ACVRL1P37023 503 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 DNA2P51530 1060 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 CCNHP51946 323 aaPredicted RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 HDAC4P56524 1084 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 GEMIN4P57678 1058 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 STX1AQ16623 288 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 TMEM259Q4ZIN3 620 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FAM72AQ5TYM5 149 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FAM72DQ6L9T8 149 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 RWDD4Q6NW29 188 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FAM72BQ86X60 149 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 PLPP6Q8IY26 295 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 PDCD7Q8N8D1 485 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FAM172AQ8WUF8 416 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 ARHGEF2Q92974 986 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 NTAN1Q96AB6 310 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 ISG20Q96AZ6 181 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 TBC1D31Q96DN5 1066 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 SELENOOQ9BVL4 669 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 MAGEH1Q9H213 219 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FZD3Q9NPG1 666 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 NDFIP2Q9NV92 336 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 NEU3Q9UQ49 428 aa16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 FCF1Q9Y324 198 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-204ENST00000469003 GOLGA4Q13439 2230 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 LRRC10BA6NIK2 292 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 LRIG2O94898 1065 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 CALB1P05937 261 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 PLEKP08567 350 aaPredicted RBP16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 ADRB3P13945 408 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 GPD1P21695 349 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 RFC1P35251 1148 aaPredicted RBP16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 UBXN1Q04323 297 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 SEL1L3Q68CR1 1132 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 KIAA1161Q6NSJ0 714 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 WDR59Q6PJI9 974 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 CCDC185Q8N715 623 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 C3orf20Q8ND61 904 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 FAM174AQ8TBP5 190 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 ERGIC2Q96RQ1 377 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 KLHL11Q9NVR0 708 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 HECAQ9UBI9 543 aaPredicted RBP16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 DNAI1Q9UI46 699 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 GPSM3Q9Y4H4 160 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 ACTL7AQ9Y615 435 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 ARID1BQ8NFD5 2236 aaPredicted RBP16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 LAMA5O15230 3695 aa16.88■□□□□ 0.29
CCDC28B-204ENST00000469003 TRPM6Q9BX84 2022 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 SIGLEC16A6NMB1 481 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 AP1G1O43747 822 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 SDC3O75056 442 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 CKMT2P17540 419 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 CDK11BP21127 795 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 HNF1BP35680 557 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 RPS21P63220 83 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 CYP4F3Q08477 520 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 ILKQ13418 452 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 SOWAHCQ53LP3 525 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 FBXL19Q6PCT2 694 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 GCNT7Q6ZNI0 430 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 MON1BQ7L1V2 547 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 ABI3BPQ7Z7G0 1075 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 PDZD3Q86UT5 571 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 OR13H1Q8NG92 308 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 FEM1CQ96JP0 617 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 MAGEB5Q9BZ81 275 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 TM6SF2Q9BZW4 377 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 ZDHHC6Q9H6R6 413 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 HPCAL4Q9UM19 191 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 FADS3Q9Y5Q0 445 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 HS3ST3A1Q9Y663 406 aa16.87■□□□□ 0.29
CCDC28B-204ENST00000469003 HELZ2Q9BYK8 2649 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 TCRBV5S1A1TA0A578 114 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 GOLGA6L22H0YM25 854 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms