RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 NR2F6P10588 404 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ZC2HC1CQ53FD0 456 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 METTL6Q8TCB7 284 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ING5Q8WYH8 240 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 COL26A1Q96A83 441 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC47A1Q96FL8 570 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 MKNK1Q9BUB5 465 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 TMEM165Q9HC07 324 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 GGA2Q9UJY4 613 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 H3BNH8 94 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 C2CD2LO14523 706 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 TMEM253P0C7T8 217 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 DRG2P55039 364 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 MLLT6P55198 1093 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 CXorf57Q6NSI4 855 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 FBXO30Q8TB52 745 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 DCLK3Q9C098 648 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 OPTCQ9UBM4 332 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ERBB3P21860 1342 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 KPNA3O00505 521 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 FSBPO95073 299 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 RARGP13631 454 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 CD151P48509 253 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 PITPNAQ00169 270 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 BOP1Q14137 746 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ACOX1Q15067 660 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 GPSM1Q86YR5 675 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 NEDD1Q8NHV4 660 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 MYBL2P10244 700 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 IGFALSP35858 605 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 CRKLP46109 303 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 NR2C2P49116 596 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 CDK7P50613 346 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 TTC7BQ86TV6 843 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 TUBGCP5Q96RT8 1024 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 USP21Q9UK80 565 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 MKLN1Q9UL63 735 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 MAU2Q9Y6X3 613 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 OR1G1P47890 313 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC7A2P52569 658 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 CBWD6Q4V339 395 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 PTAR1Q7Z6K3 402 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 RERGQ96A58 199 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 C9IYK1 514 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 DCXO43602 365 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 UGT2B17O75795 530 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 GJA9P57773 515 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC10A7Q0GE19 358 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 PTCH1Q13635 1447 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 EIF5AL1Q6IS14 154 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 SYNPOQ8N3V7 929 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 SH3RF3Q8TEJ3 882 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ANKS1AQ92625 1134 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 FBXO32Q969P5 355 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 DAGLAQ9Y4D2 1042 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ARPC4-TTLL3A0A0A6YYG9 625 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 KCNA5P22460 613 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 KYAT3Q6YP21 454 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 KAT5Q92993 513 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 TTLL2Q9BWV7 592 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 POMKQ9H5K3 350 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 GALNT6Q8NCL4 622 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ATXN2LQ8WWM7 1075 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ACAT2Q9BWD1 397 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 GRHL1Q9NZI5 618 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 TNPO3Q9Y5L0 923 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 FAM86C2PA6NEL3 165 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 SERPINB7O75635 380 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 HMGCRP04035 888 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 ITGB6P18564 788 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 PSMA1P25786 263 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 PPP3R1P63098 170 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 GPSM2P81274 684 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 SQLEQ14534 574 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 DIRAS2Q96HU8 199 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 DHRS1Q96LJ7 313 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 HGH1Q9BTY7 390 aa13.47□□□□□ -0.25
CCDC88A-204ENST00000413716 L7N2F9 121 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 OR1I1O60431 355 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 PROCP04070 461 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 BUD31P41223 144 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 VAMP2P63027 116 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 MGAT5Q09328 741 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 GLRA4Q5JXX5 417 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 FAIM2Q9BWQ8 316 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 CROCC2H7BZ55 1655 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 UPP2O95045 317 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 RPL10AP62906 217 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 PDIA5Q14554 519 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 POU6F1Q14863 301 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 GTF2IRD2BQ6EKJ0 949 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 GTF2IRD2Q86UP8 949 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 UBA3Q8TBC4 463 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 BSNDQ8WZ55 320 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 PTPRHQ9HD43 1115 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 EIF3KQ9UBQ5 218 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 SRSF11Q05519 484 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 CCDC107Q8WV48 283 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 PANX3Q96QZ0 392 aa13.46□□□□□ -0.25
CCDC88A-204ENST00000413716 OSBPL3Q9H4L5 887 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms