RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 HADHAP40939 763 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 RGS2P41220 211 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 HK2P52789 917 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 SLC12A1Q13621 1099 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 HERC3Q15034 1050 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 PABPC1LQ4VXU2 614 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 KLHDC10Q6PID8 442 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 OTOP3Q7RTS5 596 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 SPNS2Q8IVW8 549 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 DENND6AQ8IWF6 608 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 TMEM102Q8N9M5 508 aaPredicted RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 B4GALNT2Q8NHY0 566 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 ZFP28Q8NHY6 868 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 PDCD6IPQ8WUM4 868 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 DPF3Q92784 378 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 EMID1Q96A84 441 aaPredicted RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 NTAN1Q96AB6 310 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 NXNL1Q96CM4 212 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 TMA16Q96EY4 203 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF560Q96MR9 790 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 PRPF18Q99633 342 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 KIFC1Q9BW19 673 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 ULBP1Q9BZM6 244 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 GRIP2Q9C0E4 1043 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 RBM38Q9H0Z9 239 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 FBXW11Q9UKB1 542 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 TRHDEQ9UKU6 1024 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 AK5Q9Y6K8 562 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 PGK1P00558 417 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 MPP1Q00013 466 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 GALNT2Q10471 571 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 SCAPQ12770 1279 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 CDH17Q12864 832 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 CTBP1Q13363 440 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 LRRC8EQ6NSJ5 796 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 AHI1Q8N157 1196 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 CCNYL1Q8N7R7 359 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 CNTD1Q8N815 330 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 HIC2Q96JB3 615 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 FTHL17Q9BXU8 183 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF696Q9H7X3 374 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 RAD54BQ9Y620 910 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 NRCAMQ92823 1304 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 SLCO1B7G3V0H7 640 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 ASLP04424 464 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 PNPLA4P41247 253 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 HCAR3P49019 387 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 PRKAA2P54646 552 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 MYLK3Q32MK0 819 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF792Q3KQV3 632 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 ITPRIPL1Q6GPH6 555 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 GPRIN1Q7Z2K8 1008 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 CATSPER1Q8NEC5 780 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 SPATA22Q8NHS9 363 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 CELF6Q96J87 481 aaKnown RBP12.88□□□□□ -0.35
SHMT1-205ENST00000395684 DNAJC1Q96KC8 554 aaKnown RBP12.88□□□□□ -0.35
SHMT1-205ENST00000395684 TSNARE1Q96NA8 513 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 KATNBL1Q9H079 304 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 ACOT9Q9Y305 439 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 NUP205Q92621 2012 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 OTOFQ9HC10 1997 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 TSC2P49815 1807 aa12.88□□□□□ -0.35
SHMT1-205ENST00000395684 VAPBO95292 243 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 TNFAIP8O95379 198 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 NCAM1P13591 858 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 ARSAP15289 507 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 WARSP23381 471 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 IREB2P48200 963 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 MAP7Q14244 749 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 RFTN1Q14699 578 aaPredicted RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 IL23RQ5VWK5 629 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 WSCD1Q658N2 575 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 TMEM40Q8WWA1 233 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 DLG3Q92796 817 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 DTNBP1Q96EV8 351 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 MAELQ96JY0 434 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 MED10Q9BTT4 135 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 MRPS26Q9BYN8 205 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 SENP6Q9GZR1 1112 aaPredicted RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 TMEM30AQ9NV96 361 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 DDIT4Q9NX09 232 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 PTTG2Q9NZH5 202 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 BCAP29Q9UHQ4 241 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 KCNH4Q9UQ05 1017 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 RALGAPA2Q2PPJ7 1873 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 A0A1B0GTW7 788 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 RBM47A0AV96 593 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 KCNU1A8MYU2 1149 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 SDHDO14521 159 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 MTSS1O43312 755 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 DARSP14868 501 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 YBX3P16989 372 aaKnown RBP eCLIP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF26P17031 533 aaPredicted RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 AIF1P55008 147 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 INHBCP55103 352 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 DAOAP59103 153 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 CCNA1P78396 465 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 SV2CQ496J9 727 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 GK5Q6ZS86 529 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 GPC2Q8N158 579 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms