RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 IFNAR1P17181 557 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 BMP7P18075 431 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FGFR3P22607 806 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 HTR1BP28222 390 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 IL12BP29460 328 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FDFT1P37268 417 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TSFMP43897 325 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MTMR1Q13613 665 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GTF2H2Q13888 395 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 UBXN2BQ14CS0 331 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PPM1LQ5SGD2 360 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 HGSNATQ68CP4 663 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GTF2H2CQ6P1K8 395 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 C16orf59Q7L2K0 433 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 IFNL1Q8IU54 200 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SLC16A10Q8TF71 515 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM125Q96AQ2 219 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CNDP2Q96KP4 475 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 IRF2BPLQ9H1B7 796 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FAM49BQ9NUQ9 324 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 DCAF16Q9NXF7 216 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PSME2Q9UL46 239 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 METTL21EPA6NDL7 271 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 E7EWF7 191 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 hCG_1984214I3L0E3 225 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PEX12O00623 359 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CLDN4O14493 209 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MLYCDO95822 493 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 POLBP06746 335 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 HCKP08631 526 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ATP1A3P13637 1013 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GNSP15586 552 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GFPT1Q06210 699 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PDIA2Q13087 525 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TLR1Q15399 786 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 HERC6Q8IVU3 1022 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 BLIDQ8IZY5 108 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PIAS4Q8N2W9 510 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF713Q8N859 430 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SETD9Q8NE22 299 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ACSF2Q96CM8 615 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZFRQ96KR1 1074 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 KLHL5Q96PQ7 755 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FICDQ9BVA6 458 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 COLEC11Q9BWP8 271 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ATXN3LQ9H3M9 355 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PLGRKTQ9HBL7 147 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 COMMD8Q9NX08 183 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SPG21Q9NZD8 308 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GHRLQ9UBU3 117 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PACSIN3Q9UKS6 424 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 C14orf166Q9Y224 244 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 A0A0U1RQK1 487 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SERTM1A2A2V5 107 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 EEF2KO00418 725 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 THRBP10828 461 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PAX3P23760 479 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TTKP33981 857 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MAGEA3P43357 314 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CRISP1P54107 249 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CHRNB3Q05901 458 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SLC20A2Q08357 652 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GRIK4Q16099 956 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 KLHL38Q2WGJ6 581 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NOMO2Q5JPE7 1267 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF790Q6PG37 636 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FRRS1Q6ZNA5 592 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 OR13C3Q8NGS6 347 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 OR2L2Q8NH16 312 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CXorf40AQ8TE69 158 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FBXO32Q969P5 355 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CNOT6LQ96LI5 555 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 DBNDD2Q9BQY9 259 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GINS3Q9BRX5 216 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 EHD4Q9H223 541 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CRTAC1Q9NQ79 661 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 COPS7AQ9UBW8 275 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CYP8B1Q9UNU6 501 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MED31Q9Y3C7 131 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF451Q9Y4E5 1061 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SYNJ1O43426 1573 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ATAD2BQ9ULI0 1458 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PNMA6EA0A0J9YXQ4 647 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SSX4O60224 188 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TSPAN3O60637 253 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PLA2G6O60733 806 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 LATS1O95835 1130 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TPP2P29144 1249 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PGM1P36871 562 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CEBPAP49715 358 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PPP3R1P63098 170 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ITGB3BPQ13352 177 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 AMHR2Q16671 573 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 OTUD3Q5T2D3 398 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 C16orf46Q6P387 395 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 KANSL1Q7Z3B3 1105 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 COL23A1Q86Y22 540 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 RCBTB1Q8NDN9 531 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 LINS1Q8NG48 757 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 FERD3LQ96RJ6 166 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms