RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 SLC35B4Q969S0 331 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TMIGD2Q96BF3 282 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SDCCAG3Q96C92 435 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PGBD4Q96DM1 585 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 FEM1CQ96JP0 617 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SCYL1Q96KG9 808 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SNX27Q96L92 541 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 HSFY1Q96LI6 401 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 BDH2Q9BUT1 245 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 RPF2Q9H7B2 306 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 NOL11Q9H8H0 719 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 DBNDD1Q9H9R9 158 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 MAN1C1Q9NR34 630 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TBC1D13Q9NVG8 400 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PRMT7Q9NVM4 692 aaPredicted RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 CACNA2D2Q9NY47 1150 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SLC39A10Q9ULF5 831 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PSAT1Q9Y617 370 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 RNF103O00237 685 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PHGDHO43175 533 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 LDLRP01130 860 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 STMN1P16949 149 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 MPSTP25325 297 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 ARRB2P32121 409 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 CAPGP40121 348 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SLC26A3P40879 764 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 NRLP54845 237 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 DNAJB13P59910 316 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 NFATC3Q12968 1075 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TOP3AQ13472 1001 aaPredicted RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TNFAIP1Q13829 316 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 STXBP2Q15833 593 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SLC22A9Q8IVM8 553 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 ELMO3Q96BJ8 720 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 AGAP3Q96P47 875 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 CSPG4P5Q96PW8 444 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SLC9A7Q96T83 725 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 KLHL8Q9P2G9 620 aaPredicted RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 DOLKQ9UPQ8 538 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SNX5Q9Y5X3 404 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 COL4A1P02462 1669 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 H3BMQ9 156 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 KDM1AO60341 852 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 DGKIO75912 1065 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 SLURP2P0DP57 97 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PTPN2P17706 415 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 STT3AP46977 705 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 JAG1P78504 1218 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 FASTKQ14296 549 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TAF5Q15542 800 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 ZYXQ15942 572 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 CDO1Q16878 200 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 FAM117BQ6P1L5 589 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 ZNF773Q6PK81 442 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TSPAN17Q96FV3 270 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 OTUD5Q96G74 571 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 COG8Q96MW5 612 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 ATAD5Q96QE3 1844 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PEBP4Q96S96 227 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 PRKD2Q9BZL6 878 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 ING2Q9H160 280 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 LIN28AQ9H9Z2 209 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 RAVER2Q9HCJ3 691 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 DTLQ9NZJ0 730 aa4.84□□□□□ -1.63
PTPN13-201ENST00000316707 TDRKHQ9Y2W6 561 aaKnown RBP4.84□□□□□ -1.63
PTPN13-201ENST00000316707 E7ENX8 843 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 SDHDO14521 159 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ANGPT2O15123 496 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 GRID2O43424 1007 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 PRKCGP05129 697 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 CKMT2P17540 419 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 POLR2EP19388 210 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 TKTP29401 623 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 SSTR3P32745 418 aaPredicted RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 EIF2B2P49770 351 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 SOX10P56693 466 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 POU5F1BQ06416 359 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 MMRN1Q13201 1228 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 PPM1JQ5JR12 505 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 AARS2Q5JTZ9 985 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 MYO1HQ8N1T3 1032 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 CCNYQ8ND76 341 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 OR13F1Q8NGS4 319 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 CALML6Q8TD86 181 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 KLHL32Q96NJ5 620 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 CD300AQ9UGN4 299 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 PACSIN3Q9UKS6 424 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 MYH13Q9UKX3 1938 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 POLRMTO00411 1230 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ALBP02768 609 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ADORA2AP29274 412 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 RPS9P46781 194 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 STAT5BP51692 787 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 TKTL1P51854 596 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 SLC7A2P52569 658 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 WNT7BP56706 349 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 FAM98CQ17RN3 349 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 FAM83EQ2M2I3 478 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 MTX3Q5HYI7 312 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms