RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 SETSIPP0DME0 302 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 MLNP12872 115 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 CD247P20963 164 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 BAG6P46379 1132 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 GJA9P57773 515 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 PRKAA1Q13131 559 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 SPANXN3Q5MJ09 141 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 CHSY3Q70JA7 882 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 IFNEQ86WN2 208 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 CBR4Q8N4T8 237 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 SMYD1Q8NB12 490 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 RNF139Q8WU17 664 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ISOC1Q96CN7 298 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ATXN3LQ9H3M9 355 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 GIMAP2Q9UG22 337 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 CNOT6Q9ULM6 557 aaKnown RBP13.09□□□□□ -0.31
COL8A1-202ENST00000273342 SH3GLB1Q9Y371 365 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 IGKV6D-21A0A0A0MT36 114 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 RNF103-CHMP3A0A140T963 221 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 GPC4O75487 556 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 IL18RAPO95256 599 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 YWHAQP27348 245 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 NUMBP49757 651 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 NDUFV1P49821 464 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 BNIP3Q12983 259 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 NEDD8Q15843 81 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CNSTQ6PJW8 725 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 C4orf22Q6V702 233 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CEP97Q8IW35 865 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 NAT16Q8N8M0 369 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 FLAD1Q8NFF5 587 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 DLG3Q92796 817 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 C18orf25Q96B23 403 aaPredicted RBP13.08□□□□□ -0.32
COL8A1-202ENST00000273342 OSBPL6Q9BZF3 934 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 MCF2P10911 925 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 ARF4P18085 180 aaPredicted RBP13.08□□□□□ -0.32
COL8A1-202ENST00000273342 SLC7A2P52569 658 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 ESRRGP62508 458 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 RBP5P82980 135 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 POU6F1Q14863 301 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 FGD3Q5JSP0 725 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CYS1Q717R9 158 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 TMEM110Q86TL2 294 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 FBXL20Q96IG2 436 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CELF6Q96J87 481 aaKnown RBP13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CNDP1Q96KN2 507 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 RANBP9Q96S59 729 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CLK4Q9HAZ1 481 aaKnown RBP13.08□□□□□ -0.32
COL8A1-202ENST00000273342 CYP3A43Q9HB55 503 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 SPON1Q9HCB6 807 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 SELENONQ9NZV5 590 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 MGAMO43451 1857 aa13.08□□□□□ -0.32
COL8A1-202ENST00000273342 HEATR9A2RTY3 570 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 M0QYT0 321 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 ZNF189O75820 626 aaPredicted RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 MPOP05164 745 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 COL6A2P12110 1019 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SULT2A1Q06520 285 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 FASTKQ14296 549 aaKnown RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 PLCL1Q15111 1095 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 MAP7D1Q3KQU3 841 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 CLEC6AQ6EIG7 209 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 ZYG11AQ6WRX3 759 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 TMEM26Q6ZUK4 368 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 CLEC14AQ86T13 490 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 CARM1Q86X55 608 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 RNF168Q8IYW5 571 aaPredicted RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 TMEM151AQ8N4L1 468 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 ZNF513Q8N8E2 541 aaPredicted RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 ASB9Q96DX5 294 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 ZNF597Q96LX8 424 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SPATA33Q96N06 139 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 OSBPL11Q9BXB4 747 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 C2orf40Q9H1Z8 148 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 POMKQ9H5K3 350 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 PRDM16Q9HAZ2 1276 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 PNPLA3Q9NST1 481 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 NUP205Q92621 2012 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 FBP2O00757 339 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 DPYSL4O14531 572 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 DDHD2O94830 711 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 AHSGP02765 367 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SLC35E2BP0CK96 405 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 NFKB1P19838 968 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 GMPSP49915 693 aaPredicted RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 C1QTNF8P60827 252 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 YBX1P67809 324 aaKnown RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 PRKCQQ04759 706 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SYPL2Q5VXT5 272 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 BBS5Q8N3I7 341 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SLC2A14Q8TDB8 520 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 PIF1Q9H611 641 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SMOXQ9NWM0 555 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 TUBGCP4Q9UGJ1 667 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 TNFSF13BQ9Y275 285 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SOWAHBA6NEL2 793 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 EEF2KO00418 725 aaKnown RBP13.07□□□□□ -0.32
COL8A1-202ENST00000273342 CLDN5O00501 218 aa13.07□□□□□ -0.32
COL8A1-202ENST00000273342 SDHDO14521 159 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms