RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 VWA5AO00534 786 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 KRT75O95678 551 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 CHEK2O96017 543 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 PRKCGP05129 697 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 CD19P15391 556 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 MX2P20592 715 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 GRIA3P42263 894 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 MAGEA3P43357 314 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 CDH6P55285 790 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 NME5P56597 212 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 PRKCQQ04759 706 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 PRKG1Q13976 671 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 TRIM25Q14258 630 aaKnown RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 ZNF846Q147U1 533 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 ZNF394Q53GI3 561 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 NPNTQ6UXI9 565 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 C14orf80Q86SX3 495 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 ITIH5Q86UX2 942 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 MMAAQ8IVH4 418 aaKnown RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 CDKL3Q8IVW4 592 aaPredicted RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 PEX5LQ8IYB4 626 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 ADAM32Q8TC27 787 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 PPP1R36Q96LQ0 422 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 RNF157Q96PX1 679 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 EFHD1Q9BUP0 239 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 PCDHAC1Q9H158 963 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 FAM124BQ9H5Z6 455 aaPredicted RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 TMEM216Q9P0N5 145 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 PCSK1NQ9UHG2 260 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 TRAF6Q9Y4K3 522 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 COL11A1P12107 1806 aaPredicted RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 ZNF839A8K0R7 811 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 NOTOA8MTQ0 251 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 SLC22A2O15244 555 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 GPD1P21695 349 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 NR4A1P22736 598 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 SLC7A1P30825 629 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 IDUAP35475 653 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 HPCAL1P37235 193 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 TMBIM6P55061 237 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 MLLT10P55197 1068 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 TPTEP56180 551 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 ADAM17P78536 824 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 ATP6V0D2Q8N8Y2 350 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 ATG4CQ96DT6 458 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 CNDP2Q96KP4 475 aaKnown RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 UHRF1Q96T88 793 aaPredicted RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 NPAS2Q99743 824 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 EBNA1BP2Q99848 306 aaKnown RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 VRTNQ9H8Y1 702 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 SUCOQ9UBS9 1254 aaKnown RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 CNOT6Q9ULM6 557 aaKnown RBP13.3□□□□□ -0.28
NUP54-201ENST00000264883 PCDHA11Q9Y5I1 949 aa13.3□□□□□ -0.28
NUP54-201ENST00000264883 CLDN25C9JDP6 229 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 PSMD11O00231 422 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 APOL1O14791 398 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 KCNN4O15554 427 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 TADA2AO75478 443 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 JRKO75564 520 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 APRTP07741 180 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 MATN1P21941 496 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 ETFBP38117 255 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 E2F2Q14209 437 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 HERC3Q15034 1050 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 DGKDQ16760 1214 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 INSCQ1MX18 579 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 BOLA3Q53S33 107 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 BTLAQ7Z6A9 289 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 CPSF7Q8N684 471 aaKnown RBP13.29□□□□□ -0.28
NUP54-201ENST00000264883 ANKFN1Q8N957 763 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 PDZD8Q8NEN9 1154 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 CDCA5Q96FF9 252 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 CPXM1Q96SM3 734 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 TBCBQ99426 244 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 TUBA1CQ9BQE3 449 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 ADPGKQ9BRR6 497 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 MTG1Q9BT17 334 aaPredicted RBP13.29□□□□□ -0.28
NUP54-201ENST00000264883 ADI1Q9BV57 179 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 BCO2Q9BYV7 579 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 XYLT2Q9H1B5 865 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 CPSF3Q9UKF6 684 aaKnown RBP13.29□□□□□ -0.28
NUP54-201ENST00000264883 KIAA1217Q5T5P2 1943 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 DOCK5Q9H7D0 1870 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 PIK3R2O00459 728 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 PRPSAP2O60256 369 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 B4GALT4O60513 344 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 RGS20O76081 388 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 HMGCRP04035 888 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 ICAM3P32942 547 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 OPRL1P41146 370 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 LDLRAP1Q5SW96 308 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 PPP2R2DQ66LE6 453 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 CATSPERGQ6ZRH7 1159 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 RAVER1Q8IY67 606 aaKnown RBP13.29□□□□□ -0.28
NUP54-201ENST00000264883 EXOC8Q8IYI6 725 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 MFSD2AQ8NA29 543 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 CALML6Q8TD86 181 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 TOP1MTQ969P6 601 aa13.29□□□□□ -0.28
NUP54-201ENST00000264883 MRPL46Q9H2W6 279 aaKnown RBP13.29□□□□□ -0.28
NUP54-201ENST00000264883 XPNPEP3Q9NQH7 507 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms