RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NLRC4Q9NPP4 1024 aa19.41■□□□□ 0.7
CDX1-202ENST00000616154 ANLNQ9NQW6 1124 aa19.41■□□□□ 0.7
CDX1-202ENST00000616154 TMEM59LQ9UK28 342 aa19.41■□□□□ 0.7
CDX1-202ENST00000616154 STAP1Q9ULZ2 295 aa19.41■□□□□ 0.7
CDX1-202ENST00000616154 A0A087WV48 116 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 PRAMEF26H0Y7S4 382 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 ADCY5O95622 1261 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 RHOCP08134 193 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 MMP8P22894 467 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 GSCP56915 257 aaPredicted RBP19.4■□□□□ 0.7
CDX1-202ENST00000616154 TAS2R38P59533 333 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 STAT4Q14765 748 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 ALFQ53S48 1182 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 PIP5KL1Q5T9C9 394 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 ZNF683Q8IZ20 524 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 NEK11Q8NG66 645 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 NXPE2Q96DL1 559 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 C2orf49Q9BVC5 232 aaPredicted RBP19.4■□□□□ 0.7
CDX1-202ENST00000616154 TKTL2Q9H0I9 626 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 WDCPQ9H6R7 721 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.4■□□□□ 0.7
CDX1-202ENST00000616154 VPS51Q9UID3 782 aa19.4■□□□□ 0.7
CDX1-202ENST00000616154 I6L893 689 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 RNGTTO60942 597 aaKnown RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 MT-CO1P00395 513 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 CTSLP07711 333 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 UNGP13051 313 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 JUPP14923 745 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 TFE3P19532 575 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 CDK11BP21127 795 aaKnown RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 SULT1E1P49888 294 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 ILKQ13418 452 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 ACAP1Q15027 740 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 SLC25A52Q3SY17 297 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 SOWAHCQ53LP3 525 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 FAM102AQ5T9C2 384 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 NAA35Q5VZE5 725 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 FBXL19Q6PCT2 694 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 SARM1Q6SZW1 724 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 SETD3Q86TU7 594 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 CCDC114Q96M63 670 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 RTN4Q9NQC3 1192 aaKnown RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 FARP1Q9Y4F1 1045 aaPredicted RBP19.39■□□□□ 0.69
CDX1-202ENST00000616154 PAXBP1Q9Y5B6 917 aa19.39■□□□□ 0.69
CDX1-202ENST00000616154 TDRD6O60522 2096 aaKnown RBP19.38■□□□□ 0.69
CDX1-202ENST00000616154 DRGXA6NNA5 263 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 BNIP3LO60238 219 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 SNAP91O60641 907 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 F9P00740 461 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 CHRNA3P32297 505 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 FLT3P36888 993 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 CLCN6P51797 869 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 CLDN6P56747 220 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 PTP4A2Q12974 167 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 GSE1Q14687 1217 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 C6orf118Q5T5N4 469 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 ACBD5Q5T8D3 534 aaPredicted RBP19.38■□□□□ 0.69
CDX1-202ENST00000616154 HES3Q5TGS1 186 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 TRNP1Q6NT89 227 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 NEK5Q6P3R8 708 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 DCAF4L2Q8NA75 395 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 ATP11CQ8NB49 1132 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 TMEM145Q8NBT3 493 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 TMIEQ8NEW7 156 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 OR2A12Q8NGT7 310 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 CPA5Q8WXQ8 436 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 MYO6Q9UM54 1294 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 SNX10Q9Y5X0 201 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 TRPM6Q9BX84 2022 aa19.38■□□□□ 0.69
CDX1-202ENST00000616154 IGLV3-10A0A075B6K4 115 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 ENDOD1O94919 500 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 CKMT2P17540 419 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 RNASE9P60153 205 aaKnown RBP19.37■□□□□ 0.69
CDX1-202ENST00000616154 DEUP1Q05D60 604 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 CCDC15Q0P6D6 951 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 ARTNQ5T4W7 220 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 LRRC31Q6UY01 552 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 ARRDC3Q96B67 414 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 KLHDC7BQ96G42 594 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 LRIG1Q96JA1 1093 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 C1orf74Q96LT6 269 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 PCDHB18PQ96TA0 734 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 TBCBQ99426 244 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 CA5BQ9Y2D0 317 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 ASXL3Q9C0F0 2248 aa19.37■□□□□ 0.69
CDX1-202ENST00000616154 A0A1W2PQU0 124 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 GOLGA6L3A6NEY3 463 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 K7ERQ8 282 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 KPNA3O00505 521 aaPredicted RBP19.36■□□□□ 0.69
CDX1-202ENST00000616154 SMAD6O43541 496 aaKnown RBP19.36■□□□□ 0.69
CDX1-202ENST00000616154 PRNPP04156 253 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 RRM1P23921 792 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 FANCCQ00597 558 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 TARDBPQ13148 414 aaKnown RBP eCLIP19.36■□□□□ 0.69
CDX1-202ENST00000616154 PROX2Q3B8N5 592 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 C2CD6Q53TS8 623 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 HORMAD1Q86X24 394 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 PHF13Q86YI8 300 aaPredicted RBP19.36■□□□□ 0.69
CDX1-202ENST00000616154 SYT11Q9BT88 431 aa19.36■□□□□ 0.69
CDX1-202ENST00000616154 CHD5Q8TDI0 1954 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms