RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 USP10Q14694 798 aaKnown RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 CCDC153Q494R4 210 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 ZNF280DQ6N043 979 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 RBM12BQ8IXT5 1001 aaKnown RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 ZNF567Q8N184 647 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 CATSPER1Q8NEC5 780 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 RP9Q8TA86 221 aaKnown RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 RBBP8Q99708 897 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 DPEP3Q9H4B8 488 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 TIMMDC1Q9NPL8 285 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 BARX2Q9UMQ3 279 aaPredicted RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 TLL2Q9Y6L7 1015 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 SBF1O95248 1867 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 NRP1O14786 923 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 GRID2O43424 1007 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 ALDH1A2O94788 518 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 TGFB3P10600 412 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 ZNF26P17031 533 aaPredicted RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 GRM3Q14832 879 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 FASTKD5Q7L8L6 764 aaKnown RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 HERC6Q8IVU3 1022 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 RMND5BQ96G75 393 aaPredicted RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 TRPC7Q9HCX4 862 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 TRIP11Q15643 1979 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 ATP6AP2A0A1C7CYW4 349 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 ATP6AP2O75787 350 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 PSME3P61289 254 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 CELF3Q5SZQ8 465 aaKnown RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 ZFP1Q6P2D0 407 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 CHST15Q7LFX5 561 aaPredicted RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 PGAM4Q8N0Y7 254 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 LPGAT1Q92604 370 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 TRIM8Q9BZR9 551 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 ARMC7Q9H6L4 198 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 PRSS51A0A1B0GVH4 220 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 MPP3Q13368 585 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 IKBKEQ14164 716 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 XKR5Q6UX68 686 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.63■□□□□ 0.57
UPF1-210ENST00000600689 PPP1R13LQ8WUF5 828 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 RPL10LQ96L21 214 aaKnown RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 TSNARE1Q96NA8 513 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 CPNE1Q99829 537 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 HAUS8Q9BT25 410 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 THEGQ9P2T0 379 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 MYRFQ9Y2G1 1151 aa18.63■□□□□ 0.57
UPF1-210ENST00000600689 DICER1Q9UPY3 1922 aaKnown RBP18.63■□□□□ 0.57
UPF1-210ENST00000600689 SLC44A4Q53GD3 710 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 STEAP4Q687X5 459 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 EFCAB12Q6NXP0 572 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 ZBTB49Q6ZSB9 765 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 ERO1BQ86YB8 467 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 TICAM1Q8IUC6 712 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 SLC41A1Q8IVJ1 513 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 OR9I1Q8NGQ6 314 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 USP33Q8TEY7 942 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 VPS39Q96JC1 886 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 BCAS2O75934 225 aaPredicted RBP18.62■□□□□ 0.57
UPF1-210ENST00000600689 H6PDO95479 791 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 POU5F1BQ06416 359 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 ATP1A4Q13733 1029 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 PPP1R3AQ16821 1122 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 AGKQ53H12 422 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 GRTP1Q5TC63 336 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 IER5Q5VY09 327 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 MORF4L1Q9UBU8 362 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 VANGL2Q9ULK5 521 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 EVPLQ92817 2033 aa18.62■□□□□ 0.57
UPF1-210ENST00000600689 CYP2C8P10632 490 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 KIZQ2M2Z5 673 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 LCLAT1Q6UWP7 414 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 CDCA5Q96FF9 252 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 KIF12Q96FN5 646 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 RAP2CQ9Y3L5 183 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 LRRC37A2A6NM11 1700 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 ACKR2O00590 384 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 PRDX6P30041 224 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 LIMK2P53671 638 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 KCTD2Q14681 263 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 TMEM132DQ14C87 1099 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 DCAF6Q58WW2 860 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 STXBP5Q5T5C0 1151 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 KCNMB4Q86W47 210 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 CHERPQ8IWX8 916 aaKnown RBP18.61■□□□□ 0.57
UPF1-210ENST00000600689 ANKRD13AQ8IZ07 590 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 FNDC8Q8TC99 324 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 SOX17Q9H6I2 414 aaPredicted RBP18.61■□□□□ 0.57
UPF1-210ENST00000600689 XPR1Q9UBH6 696 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 BCAP29Q9UHQ4 241 aa18.61■□□□□ 0.57
UPF1-210ENST00000600689 TCAF2A6NFQ2 919 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 GIPC1O14908 333 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 TXNP10599 105 aaKnown RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 CTBP1Q13363 440 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 INSCQ1MX18 579 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 OFCC1Q8IZS5 231 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 PFDN4Q9NQP4 134 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 OXSMQ9NWU1 459 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 BFARQ9NZS9 450 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 V9GYQ6 96 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 MGAMO43451 1857 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms