RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 BAIAP3O94812 1187 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 HOXB6P17509 224 aaKnown RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 TPP2P29144 1249 aaPredicted RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 PTENP60484 403 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 ACTR3P61158 418 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 DDR2Q16832 855 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 OLFML2BQ68BL8 750 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 ADAM33Q9BZ11 813 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 RIBC2Q9H4K1 309 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 SERPINB1P30740 379 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 PTPN9P43378 593 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 MTERF3Q96E29 417 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 FERD3LQ96RJ6 166 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 WDR24Q96S15 920 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 HGH1Q9BTY7 390 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 SYN3O14994 580 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 TLR5O60602 858 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 PCSK2P16519 638 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 FMO4P31512 558 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 ILF3Q12906 894 aaKnown RBP eCLIP20.71■□□□□ 0.913e-9■□□□□ 8.5
UPF1-207ENST00000599848 SCUBE3Q8IX30 993 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 ANGPT4Q9Y264 503 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 AK9Q5TCS8 1911 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 CCDC154A6NI56 674 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 VIPP01282 170 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 ABCB1P08183 1280 aaPredicted RBP20.71■□□□□ 0.91
UPF1-207ENST00000599848 ARMCX4Q5H9R4 360 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 LRRC38Q5VT99 294 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 TXNDC11Q6PKC3 985 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 GALNT4Q8N4A0 578 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 CD99L2Q8TCZ2 262 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 CCT8L2Q96SF2 557 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 USP20Q9Y2K6 914 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 COL5A2P05997 1499 aaPredicted RBP20.71■□□□□ 0.91
UPF1-207ENST00000599848 E7ENQ6 273 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 HOXC12P31275 282 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 PDX1P52945 283 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 FAM228AQ86W67 206 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 NDUFA13Q9P0J0 144 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 INPP4BO15327 924 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 ATG13O75143 517 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 FGF1P05230 155 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 OR1D2P34982 312 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 CBX2Q14781 532 aaPredicted RBP20.71■□□□□ 0.91
UPF1-207ENST00000599848 SELENOMQ8WWX9 145 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 CRELD1Q96HD1 420 aa20.71■□□□□ 0.91
UPF1-207ENST00000599848 A0A0B4J269 797 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 FAM180AQ6UWF9 173 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 ZNF780BQ9Y6R6 833 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 GJB1P08034 283 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 TYW3Q6IPR3 259 aaKnown RBP20.7■□□□□ 0.9
UPF1-207ENST00000599848 NPAS4Q8IUM7 802 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 HDDC3Q8N4P3 179 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 TATDN2Q93075 761 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 KLRG1Q96E93 195 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 COPS8Q99627 209 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 LMAN2LQ9H0V9 348 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 GULP1Q9UBP9 304 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 RECQL5O94762 991 aaPredicted RBP20.7■□□□□ 0.9
UPF1-207ENST00000599848 LPOP22079 712 aaPredicted RBP20.7■□□□□ 0.9
UPF1-207ENST00000599848 ZC3H12AQ5D1E8 599 aaKnown RBP20.7■□□□□ 0.9
UPF1-207ENST00000599848 SPRYD7Q5W111 196 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 TCAIMQ8N3R3 496 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 TRPC4APQ8TEL6 797 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 FAM136AQ96C01 138 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 PPP3R2Q96LZ3 170 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 RABGEF1Q9UJ41 708 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 E5RJQ4 531 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 FAM86B1E9PN63 330 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 SEPT4O43236 478 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 FAM86B2P0C5J1 330 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 RAB14P61106 215 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 AGKQ53H12 422 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 PPP2R2DQ66LE6 453 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 KCNT2Q6UVM3 1135 aa20.7■□□□□ 0.9
UPF1-207ENST00000599848 DNALI1O14645 258 aaPredicted RBP20.69■□□□□ 0.9
UPF1-207ENST00000599848 PPIBP23284 216 aaKnown RBP20.69■□□□□ 0.9
UPF1-207ENST00000599848 SERPINB5P36952 375 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 ATP6V0D1P61421 351 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 RBM23Q86U06 439 aaKnown RBP20.69■□□□□ 0.9
UPF1-207ENST00000599848 KIAA0319LQ8IZA0 1049 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 RBFAQ8N0V3 343 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 SH3GL3Q99963 347 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 TAGLN3Q9UI15 199 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 SIGLEC16A6NMB1 481 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 SLC28A1O00337 649 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 MAP3K6O95382 1288 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 HLA-DQA2P01906 255 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 TRAF2Q12933 501 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 HDDC2Q7Z4H3 204 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 TCF7L2Q9NQB0 619 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 IL1RAPL1Q9NZN1 696 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 CROTQ9UKG9 612 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 AGO1Q9UL18 857 aaKnown RBP20.69■□□□□ 0.9
UPF1-207ENST00000599848 VSTM5A8MXK1 200 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 ITGA2P17301 1181 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 SOX11P35716 441 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 PLIN5Q00G26 463 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 KLC1Q07866 573 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 LGALS3BPQ08380 585 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms