RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 LOXL2Q9Y4K0 774 aa12.06□□□□□ -0.48
CLK3-222ENST00000568232 FBN2P35556 2912 aa12.06□□□□□ -0.48
CLK3-222ENST00000568232 CELSR2Q9HCU4 2923 aa12.06□□□□□ -0.48
CLK3-222ENST00000568232 A0A1W2PQM1 296 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 D6RAR5 112 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 ALOX15BO15296 676 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 YY2O15391 372 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 LTFP02788 710 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 FYNP06241 537 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 TACR2P21452 398 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 PLK1P53350 603 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 SULT2A1Q06520 285 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 STK4Q13043 487 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 PRRT3Q5FWE3 981 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 KYAT3Q6YP21 454 aaKnown RBP12.05□□□□□ -0.48
CLK3-222ENST00000568232 CHSY1Q86X52 802 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 DTX1Q86Y01 620 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 CCAR2Q8N163 923 aaKnown RBP12.05□□□□□ -0.48
CLK3-222ENST00000568232 SCML4Q8N228 414 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 SDR16C5Q8N3Y7 309 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 OR52K2Q8NGK3 314 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 DQX1Q8TE96 717 aaKnown RBP12.05□□□□□ -0.48
CLK3-222ENST00000568232 ERCC4Q92889 916 aaPredicted RBP12.05□□□□□ -0.48
CLK3-222ENST00000568232 GLMNQ92990 594 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 USP7Q93009 1102 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 ALG14Q96F25 216 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 SLC39A13Q96H72 371 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 GFM1Q96RP9 751 aaKnown RBP12.05□□□□□ -0.48
CLK3-222ENST00000568232 SLC17A9Q9BYT1 436 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 CLPBQ9H078 707 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 CUEDC2Q9H467 287 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 GULP1Q9UBP9 304 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 HESX1Q9UBX0 185 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 ANAPC2Q9UJX6 822 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 PCDHB11Q9Y5F2 797 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 RP1P56715 2156 aa12.05□□□□□ -0.48
CLK3-222ENST00000568232 NBASA2RRP1 2371 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 C9orf172C9J069 976 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 EIF5BO60841 1220 aaKnown RBP12.04□□□□□ -0.48
CLK3-222ENST00000568232 MT-CO1P00395 513 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CELA2BP08218 269 aaPredicted RBP12.04□□□□□ -0.48
CLK3-222ENST00000568232 CD19P15391 556 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CHRNA3P32297 505 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 RABIFP47224 123 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 MAPK10P53779 464 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 NUCB2P80303 420 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 SLC12A1Q13621 1099 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 ZC3H12AQ5D1E8 599 aaKnown RBP12.04□□□□□ -0.48
CLK3-222ENST00000568232 CXorf57Q6NSI4 855 aaKnown RBP12.04□□□□□ -0.48
CLK3-222ENST00000568232 PMF1Q6P1K2 205 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 GRAMD1CQ8IYS0 662 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 IQUBQ8NA54 791 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 KIAA0895Q8NCT3 520 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CCDC150Q8NCX0 1101 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 FAM174AQ8TBP5 190 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 TMEM174Q8WUU8 243 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CCDC74AQ96AQ1 378 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 EEF2KMTQ96G04 330 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CPEB1Q9BZB8 566 aaKnown RBP12.04□□□□□ -0.48
CLK3-222ENST00000568232 SIRPGQ9P1W8 387 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 SPASTQ9UBP0 616 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 APOBEC3BQ9UH17 382 aaKnown RBP12.04□□□□□ -0.48
CLK3-222ENST00000568232 SLC25A13Q9UJS0 675 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 NAALADL1Q9UQQ1 740 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 TLR6Q9Y2C9 796 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 FRMD4BQ9Y2L6 1034 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CENPEQ02224 2701 aa12.04□□□□□ -0.48
CLK3-222ENST00000568232 CRYBG3Q68DQ2 2970 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 PVALEFA0A1B0GWK0 134 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 LMO7DNF2Z398 122 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 TMX2-CTNND1H3BSU7 103 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 K7ERQ8 282 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 MTSS1O43312 755 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 RPLP0P05388 317 aaKnown RBP12.03□□□□□ -0.48
CLK3-222ENST00000568232 ANXA6P08133 673 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 PDIA4P13667 645 aaKnown RBP12.03□□□□□ -0.48
CLK3-222ENST00000568232 NOS2P35228 1153 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 TCEA2Q15560 299 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 ESRP1Q6NXG1 681 aaKnown RBP12.03□□□□□ -0.48
CLK3-222ENST00000568232 ADGRD1Q6QNK2 874 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 ERN2Q76MJ5 926 aaKnown RBP12.03□□□□□ -0.48
CLK3-222ENST00000568232 TAC4Q86UU9 113 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 SH2D3CQ8N5H7 860 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 KYQ8NBH2 561 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 CHST14Q8NCH0 376 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 OR2A12Q8NGT7 310 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 IRGQQ8WZA9 623 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 MIB2Q96AX9 1013 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 SERPINB11Q96P15 392 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 KLF6Q99612 283 aaPredicted RBP12.03□□□□□ -0.48
CLK3-222ENST00000568232 FEM1AQ9BSK4 669 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 LRRC61Q9BV99 259 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 MIS12Q9H081 205 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 DYRK4Q9NR20 520 aa12.03□□□□□ -0.48
CLK3-222ENST00000568232 CSMD1Q96PZ7 3565 aa12.02□□□□□ -0.48
CLK3-222ENST00000568232 O00370 1275 aa12.02□□□□□ -0.49
CLK3-222ENST00000568232 PDXKO00764 312 aa12.02□□□□□ -0.49
CLK3-222ENST00000568232 FPGTO14772 594 aa12.02□□□□□ -0.49
CLK3-222ENST00000568232 SETSIPP0DME0 302 aa12.02□□□□□ -0.49
CLK3-222ENST00000568232 SRCP12931 536 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms