RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 XRCC6P12956 609 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAHP16930 419 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 PTGS1P23219 599 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TACR1P25103 407 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 HOXD10P28358 340 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TTKP33981 857 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SLC15A1P46059 708 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 ZNF81P51508 661 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 EPHB3P54753 998 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CASP9P55211 416 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 WNT3P56703 355 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 INHBEP58166 350 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TUBB4BP68371 445 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 IRX3P78415 501 aaPredicted RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 MAP2K1Q02750 393 aaPredicted RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CEBPZQ03701 1054 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TBL3Q12788 808 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 RALGDSQ12967 914 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 GPS1Q13098 491 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 AIMP2Q13155 320 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TRA2AQ13595 282 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SNTB1Q13884 538 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 ZNF766Q5HY98 468 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 ABLIM2Q6H8Q1 611 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 RTL3Q8N8U3 475 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TMEM116Q8NCL8 245 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CNNM3Q8NE01 707 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 PRCCQ92733 491 aaPredicted RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 INTS12Q96CB8 462 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SAT2Q96F10 170 aaPredicted RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 JMJD8Q96S16 334 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM118BQ9BPY3 351 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 ZPBPQ9BS86 351 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TTPALQ9BTX7 342 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 PACSIN1Q9BY11 444 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SLC5A7Q9GZV3 580 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 ABCG8Q9H221 673 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 IL1RAPL2Q9NP60 686 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 PPP1R14DQ9NXH3 145 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 TRPS1Q9UHF7 1281 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM153AQ9UHL3 310 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 APPL1Q9UKG1 709 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CFAP45Q9UL16 551 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SLC45A2Q9UMX9 530 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 RPH3AQ9Y2J0 694 aaPredicted RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 PLEKHM1Q9Y4G2 1056 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SNX11Q9Y5W9 270 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 BTAF1O14981 1849 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 DOT1LQ8TEK3 1739 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CACNA1FO60840 1977 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SBF2Q86WG5 1849 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CCDC187A0A096LP49 1063 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 SYCE3A1L190 88 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 OR2A25A4D2G3 310 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 CCDC169A6NNP5 214 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 GRM8O00222 908 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 LDLRAD4O15165 306 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ZSCAN9O15535 394 aaPredicted RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 RRP9O43818 475 aaKnown RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 HEXIM1O94992 359 aaKnown RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 TRIM16O95361 564 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ABCB1P08183 1280 aaPredicted RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 PRR35P0CG20 571 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 PEPDP12955 493 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 TAL1P17542 331 aaPredicted RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 GABRB1P18505 474 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 IL10P22301 178 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 RPA1P27694 616 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 SLC5A2P31639 672 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 MC5RP33032 325 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 GUCY1A2P33402 732 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ACAA2P42765 397 aaKnown RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ATXN3P54252 364 aaPredicted RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ARHGAP8P85298 464 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 PRKCQQ04759 706 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 LMAN2Q12907 356 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 CLCA4Q14CN2 919 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 CRB2Q5IJ48 1285 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ERICH6BQ5W0A0 696 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 GRAMD4Q6IC98 578 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 KIAA0930Q6ICG6 404 aaPredicted RBP5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 SLC25A24Q6NUK1 477 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 GBP6Q6ZN66 633 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 RNF111Q6ZNA4 994 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 PROSER1Q86XN7 944 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ZNF34Q8IZ26 560 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 ABI1Q8IZP0 508 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 FBXW8Q8N3Y1 598 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 MFSD4AQ8N468 514 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 FSIP1Q8NA03 581 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 OR7D4Q8NG98 312 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 PHOSPHO1Q8TCT1 267 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 CALML6Q8TD86 181 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 HASPINQ8TF76 798 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 CORO2AQ92828 525 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 TMCO6Q96DC7 493 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 SAAL1Q96ER3 474 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 DGAT2Q96PD7 388 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM111AQ96PZ2 611 aa5.38□□□□□ -1.55
VPS35P1-201ENST00000563400 CRAMP1Q96RY5 1269 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms