RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DENRO43583 198 aaKnown RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 PARNO95453 639 aaKnown RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 IQCF3P0C7M6 154 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 CCDC166P0CW27 439 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 RXRGP48443 463 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 GJA9P57773 515 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 IL1RL1Q01638 556 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 CCDC153Q494R4 210 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 NCBP2-AS2Q69YL0 99 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 ZPBP2Q6X784 338 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 LDB1Q86U70 411 aaPredicted RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 DDIASQ8IXT1 998 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 NIM1KQ8IY84 436 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 RP9Q8TA86 221 aaKnown RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 SLC7A14Q8TBB6 771 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 MAGEE2Q8TD90 523 aaPredicted RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 ARNTL2Q8WYA1 636 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 VPS50Q96JG6 964 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 EFHD1Q9BUP0 239 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 VPS33BQ9H267 617 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 PCDH12Q9NPG4 1184 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 HEATR9A2RTY3 570 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 TRIM43BA6NCK2 446 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 DFFAO00273 331 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 MRASO14807 208 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 CHRM3P20309 590 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 CNTFP26441 200 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 C21orf59P57076 290 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 FOXD4Q12950 439 aaPredicted RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 IKBKEQ14164 716 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 SURF1Q15526 300 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 PIGGQ5H8A4 983 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 SPATA22Q8NHS9 363 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 SEPT1Q8WYJ6 367 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 PCYT2Q99447 389 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 LRRC40Q9H9A6 602 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 SPON1Q9HCB6 807 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 FOCADQ5VW36 1801 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 SPATA31C2B4DYI2 1134 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 G3V2L1 256 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 EEF2KO00418 725 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 SOCS2O14508 198 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 TOR1BO14657 336 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 INPP4BO15327 924 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 B4GAT1O43505 415 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 SUPT7LO94864 414 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 PRKCGP05129 697 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 PCNAP12004 261 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 NCK1P16333 377 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 LRPAP1P30533 357 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 EIF2B2P49770 351 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 NDUFV1P49821 464 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 LSM3P62310 102 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 ITKQ08881 620 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 PPP1R8Q12972 351 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 MAPK11Q15759 364 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 FGD3Q5JSP0 725 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 FAM35AQ86V20 835 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 BPIFB6Q8NFQ5 453 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 RBBP8Q99708 897 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 CPNE1Q99829 537 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 CACNG4Q9UBN1 327 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 RAP2CQ9Y3L5 183 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 PTGDR2Q9Y5Y4 395 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 ZBTB24O43167 697 aaPredicted RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 IL1BP01584 269 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 ZNF182P17025 639 aaPredicted RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 CDH5P33151 784 aaPredicted RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 HARS2P49590 506 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 ADIGQ0VDE8 80 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 KIZQ2M2Z5 673 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 ZFP1Q6P2D0 407 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 SCIMPQ6UWF3 145 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 OTOP3Q7RTS5 596 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 FBXO16Q8IX29 292 aaPredicted RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 PGAM4Q8N0Y7 254 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 DDHD1Q8NEL9 900 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 EDEM1Q92611 657 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 C18orf25Q96B23 403 aaPredicted RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 TIMMDC1Q9NPL8 285 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 TSC22D4Q9Y3Q8 395 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 PRORSD1PA6NEY8 169 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 MATN2O00339 956 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 UBDO15205 165 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 MAFGO15525 162 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 GCATO75600 419 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 MYL4P12829 197 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 NFKB1P19838 968 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 AKAP5P24588 427 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 TMED10P49755 219 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 CD300CQ08708 224 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 BFSP2Q13515 415 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 GRTP1Q5TC63 336 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 SLC2A14Q8TDB8 520 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 RNF139Q8WU17 664 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 LRCH3Q96II8 777 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 GOLGA2P5Q9HBQ8 144 aa11.49□□□□□ -0.57
LDLR-208ENST00000558518 PRPF19Q9UMS4 504 aaKnown RBP11.49□□□□□ -0.57
LDLR-208ENST00000558518 ZNF510Q9Y2H8 683 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms