RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SPTY2D1-AS1A0A0U1RR47 76 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 POM121BA6NF01 834 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 CETN3O15182 167 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 TRUB2O95900 331 aaKnown RBP13.06□□□□□ -0.32
SCAF11-208ENST00000546534 CSF2P04141 144 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 NME1P15531 152 aaKnown RBP13.06□□□□□ -0.32
SCAF11-208ENST00000546534 CHRNA3P32297 505 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 IRAK1P51617 712 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 PDX1P52945 283 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 DPYDQ12882 1025 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 DRAP1Q14919 205 aaPredicted RBP13.06□□□□□ -0.32
SCAF11-208ENST00000546534 STILQ15468 1287 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 DEFB133Q30KQ1 61 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 TMEM259Q4ZIN3 620 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 ATG14Q6ZNE5 492 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 BEND5Q7L4P6 421 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 DCP2Q8IU60 420 aaKnown RBP13.06□□□□□ -0.32
SCAF11-208ENST00000546534 ATP6V0D2Q8N8Y2 350 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 OR2A12Q8NGT7 310 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 TMUB1Q9BVT8 246 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 ST7Q9NRC1 585 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 STARD5Q9NSY2 213 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 NCKIPSDQ9NZQ3 722 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 KLF15Q9UIH9 416 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 VPS28Q9UK41 221 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 RCOR1Q9UKL0 485 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 HS3ST3A1Q9Y663 406 aa13.06□□□□□ -0.32
SCAF11-208ENST00000546534 CCDC187A0A096LP49 1063 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 MUSKO15146 869 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 RAD51BO15315 384 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 SART1O43290 800 aaKnown RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 AQP9O43315 295 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 TCEA3O75764 348 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 MT-CO1P00395 513 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 F13A1P00488 732 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 IGLV3-25P01717 112 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 ITGA2BP08514 1039 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 ZSCAN22P10073 491 aaPredicted RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 SRCP12931 536 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 ITGB6P18564 788 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 RPL34P49207 117 aaKnown RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 CENPCQ03188 943 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 CCDC15Q0P6D6 951 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 EIF4EBP2Q13542 120 aaPredicted RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 FGL2Q14314 439 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 RABGAP1LQ5R372 815 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 TTC39BQ5VTQ0 682 aaPredicted RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 ATL3Q6DD88 541 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 FBXL22Q6P050 247 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 XKR5Q6UX68 686 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 USP53Q70EK8 1073 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 TMIEQ8NEW7 156 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 FAM174AQ8TBP5 190 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 LMX1AQ8TE12 382 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 EXTL1Q92935 676 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 KAT5Q92993 513 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 RNF34Q969K3 372 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 RPRD1AQ96P16 312 aaPredicted RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 PPP1R9BQ96SB3 815 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 DYRK4Q9NR20 520 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 SLC12A6Q9UHW9 1150 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 SALL4Q9UJQ4 1053 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 HPSEQ9Y251 543 aa13.05□□□□□ -0.32
SCAF11-208ENST00000546534 UBR5O95071 2799 aaPredicted RBP13.05□□□□□ -0.32
SCAF11-208ENST00000546534 H3BM21 787 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 K7ELQ4 463 aaPredicted RBP13.04□□□□□ -0.32
SCAF11-208ENST00000546534 K7ERQ8 282 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 SUV39H1O43463 412 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 GJB6O95452 261 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 CMA1P23946 247 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 GPD2P43304 727 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 DNM1Q05193 864 aaKnown RBP13.04□□□□□ -0.32
SCAF11-208ENST00000546534 NR0B2Q15466 257 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 TGIF1Q15583 401 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 TPRG1LQ5T0D9 272 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 KYAT3Q6YP21 454 aaKnown RBP13.04□□□□□ -0.32
SCAF11-208ENST00000546534 ERN2Q76MJ5 926 aaKnown RBP13.04□□□□□ -0.32
SCAF11-208ENST00000546534 PARGQ86W56 976 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 PARP9Q8IXQ6 854 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 SMYD4Q8IYR2 804 aaPredicted RBP13.04□□□□□ -0.32
SCAF11-208ENST00000546534 CHST14Q8NCH0 376 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 SLC35C1Q96A29 364 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 IL12RB2Q99665 862 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 ARHGAP9Q9BRR9 750 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 TRIM62Q9BVG3 475 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 SLC17A9Q9BYT1 436 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 POPDC2Q9HBU9 364 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 IPO11Q9UI26 975 aaKnown RBP13.04□□□□□ -0.32
SCAF11-208ENST00000546534 CFAP45Q9UL16 551 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 HS3ST2Q9Y278 367 aa13.04□□□□□ -0.32
SCAF11-208ENST00000546534 TPP1O14773 563 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SMAD6O43541 496 aaKnown RBP13.03□□□□□ -0.32
SCAF11-208ENST00000546534 NOBOXO60393 691 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SNAP91O60641 907 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 PAK4O96013 591 aaPredicted RBP13.03□□□□□ -0.32
SCAF11-208ENST00000546534 PRNPP04156 253 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 FAM87AP0C7U9 286 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 JUNDP17535 347 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 RRM1P23921 792 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms