RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 RNF25Q96BH1 459 aaPredicted RBP8.6□□□□□ -1.03
CHD4-208ENST00000540960 ZNF512Q96ME7 567 aaPredicted RBP8.6□□□□□ -1.03
CHD4-208ENST00000540960 TTC25Q96NG3 672 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 P2RY13Q9BPV8 354 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 CALN1Q9BXU9 219 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 FBXO44Q9H4M3 255 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 ZWILCHQ9H900 591 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 PCDH9Q9HC56 1237 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 CSNK1G1Q9HCP0 422 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 KRT82Q9NSB4 513 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 CYTH4Q9UIA0 394 aa8.6□□□□□ -1.03
CHD4-208ENST00000540960 HACD1B0YJ81 288 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 I3L4J1 428 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 APOL1O14791 398 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 EIF3HO15372 352 aaKnown RBP eCLIP8.59□□□□□ -1.033e-7■■■□□ 16.6
CHD4-208ENST00000540960 MTSS1O43312 755 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 SUV39H1O43463 412 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CST8O60676 142 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ENDOD1O94919 500 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ZBED1O96006 694 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 KRT14P02533 472 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 SLC2A3P11169 496 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 LCP1P13796 627 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CCDC130P13994 396 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 TSHRP16473 764 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 LMO2P25791 158 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 TKTP29401 623 aaKnown RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 ELF1P32519 619 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 MAGEA11P43364 429 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 HCAR3P49019 387 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 PSEN1P49768 467 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 RGS7P49802 495 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 PLTPP55058 493 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CDH6P55285 790 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 SEC13P55735 322 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 OGDHQ02218 1023 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ZNF33AQ06730 810 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 DHX9Q08211 1270 aaKnown RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 GRIK2Q13002 908 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 SIX1Q15475 284 aaPredicted RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 DPYSL2Q16555 572 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 PTPRNQ16849 979 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 PLEKHG6Q3KR16 790 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CCDC14Q49A88 953 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 C2CD6Q53TS8 623 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 EFHC2Q5JST6 749 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ZNF280DQ6N043 979 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 SCYL2Q6P3W7 929 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 MFSD7Q6UXD7 560 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CD300LGQ6UXG3 332 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ADAT2Q7Z6V5 191 aaKnown RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 TADA2BQ86TJ2 420 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 FAM35AQ86V20 835 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 RELL1Q8IUW5 271 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CDKL3Q8IVW4 592 aaPredicted RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 IQCKQ8N0W5 287 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 JOSD2Q8TAC2 188 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 USP33Q8TEY7 942 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 C1orf54Q8WWF1 131 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ART4Q93070 314 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 NTAN1Q96AB6 310 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ACDQ96AP0 544 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 FAM149B1Q96BN6 582 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 PGAP3Q96FM1 320 aaPredicted RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 PPP1R2P1Q96PQ5 205 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 CDK5RAP1Q96SZ6 601 aaKnown RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 HEMGNQ9BXL5 484 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ROPN1BQ9BZX4 212 aaPredicted RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 TRIM7Q9C029 511 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 PABPC3Q9H361 631 aaKnown RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 ROPN1Q9HAT0 212 aaPredicted RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 ASAH2Q9NR71 780 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.59□□□□□ -1.03
CHD4-208ENST00000540960 MAFFQ9ULX9 164 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 SHOC2Q9UQ13 582 aa8.59□□□□□ -1.03
CHD4-208ENST00000540960 ZNF638Q14966 1978 aaKnown RBP8.59□□□□□ -1.03
CHD4-208ENST00000540960 CSMD1Q96PZ7 3565 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 TMEM131Q92545 1883 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 BRINP1O60477 761 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 NUDT17P0C025 328 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 MAOBP27338 520 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 OAS2P29728 719 aaKnown RBP8.58□□□□□ -1.04
CHD4-208ENST00000540960 DPP6P42658 865 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 TKTL1P51854 596 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 PMS2P54278 862 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 TMPRSS3P57727 454 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 RPL10AP62906 217 aaKnown RBP8.58□□□□□ -1.04
CHD4-208ENST00000540960 SARNPP82979 210 aaKnown RBP8.58□□□□□ -1.04
CHD4-208ENST00000540960 RPL6Q02878 288 aaKnown RBP8.58□□□□□ -1.04
CHD4-208ENST00000540960 ADCY2Q08462 1091 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 ADIGQ0VDE8 80 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 TARDBPQ13148 414 aaKnown RBP eCLIP8.58□□□□□ -1.04
CHD4-208ENST00000540960 RTP5Q14D33 572 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 CRY1Q16526 586 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 KRTAP21-3Q3LHN1 58 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 FBXO43Q4G163 708 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 RAB41Q5JT25 222 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 C6orf118Q5T5N4 469 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 KAZNQ674X7 775 aa8.58□□□□□ -1.04
CHD4-208ENST00000540960 PM20D1Q6GTS8 502 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms