RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF438Q7Z4V0 828 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 BPIFB6Q8NFQ5 453 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 HDAC11Q96DB2 347 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 GLT1D1Q96MS3 346 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 RBM14Q96PK6 669 aaKnown RBP9.61□□□□□ -0.87
CLIP1-214ENST00000540539 PIP5K1AQ99755 562 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 MECRQ9BV79 373 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 SLC13A1Q9BZW2 595 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 ARMT1Q9H993 441 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 JMJD4Q9H9V9 463 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 C20orf96Q9NUD7 363 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-214ENST00000540539 FAM8A1Q9UBU6 413 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 ZNF175Q9Y473 711 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 SCN9AQ15858 1988 aa9.61□□□□□ -0.87
CLIP1-214ENST00000540539 PTPRFP10586 1907 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 MYMKA6NI61 221 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 C16orf96A6NNT2 1141 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CD4P01730 458 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GZMAP12544 262 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CD40LGP29965 261 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 FMO4P31512 558 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 ST13P50502 369 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 ARHGDIBP52566 201 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 ATXN3P54252 364 aaPredicted RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GPX6P59796 221 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 OLR1P78380 273 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CD83Q01151 205 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 BNIP2Q12982 314 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 MRPL28Q13084 256 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 FAM26DQ5JW98 314 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 DESI1Q6ICB0 168 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GJB7Q6PEY0 223 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 KCNT2Q6UVM3 1135 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 DYMQ7RTS9 669 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 PODNQ7Z5L7 613 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 THNSL1Q8IYQ7 743 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SNX31Q8N9S9 440 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TFAP2CQ92754 450 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CD101Q93033 1021 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 APOPT1Q96IL0 206 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GDF15Q99988 308 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TUBA1CQ9BQE3 449 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TTYH2Q9BSA4 534 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 PPCSQ9HAB8 311 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 KCNQ5Q9NR82 932 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 ACOXLQ9NUZ1 547 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SLCO3A1Q9UIG8 710 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 DOCK2Q92608 1830 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CCDC195A0A1B0GUA6 201 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 PRR23AA6NEV1 266 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TRPC5OSA6NMA1 111 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 LEUTXA8MZ59 168 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 NOP56O00567 594 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 DNAJB5O75953 348 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CPNE6O95741 557 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GOT2P00505 430 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 YBX3P16989 372 aaKnown RBP eCLIP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CYP3A5P20815 502 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 MMP8P22894 467 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SHMT1P34896 483 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SERPINH1P50454 418 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 RCAN1P53805 252 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GTF2IP78347 998 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 BST2Q10589 180 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TRAP1Q12931 704 aaKnown RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TRIM32Q13049 653 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 MMRN1Q13201 1228 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 ACAP2Q15057 778 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TEX44Q53QW1 395 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 AGAP6Q5VW22 663 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 FOXR2Q6PJQ5 311 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 BEND5Q7L4P6 421 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CHST15Q7LFX5 561 aaPredicted RBP9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GSTA5Q7RTV2 222 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 LRRTM3Q86VH5 581 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SHCBP1Q8NEM2 672 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 TGFBRAP1Q8WUH2 860 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 GTF2H4Q92759 462 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SNAPC3Q92966 411 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 DMRTB1Q96MA1 342 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 AGAP4Q96P64 663 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 ASB2Q96Q27 587 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 BEGAINQ9BUH8 593 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 C20orf27Q9GZN8 174 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 LTBP3Q9NS15 1303 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 FAM105AQ9NUU6 356 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 LRP2BPQ9P2M1 347 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 SNX7Q9UNH6 387 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 CACNG2Q9Y698 323 aa9.6□□□□□ -0.87
CLIP1-214ENST00000540539 COL4A5P29400 1685 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ZNF98A6NK75 572 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 H0Y858 1186 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 GSNP06396 782 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 CLEC2LP0C7M8 214 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 CCND2P30279 289 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 L1CAMP32004 1257 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ADCY7P51828 1080 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 NDST1P52848 882 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 HADHBP55084 474 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms