RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 OSBPL2Q9H1P3 480 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 GPAMQ9HCL2 828 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 ACSS2Q9NR19 701 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 TMLHEQ9NVH6 421 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 IRAK4Q9NWZ3 460 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 MID2Q9UJV3 735 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PATJQ8NI35 1801 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 APOA4P06727 396 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 DNAJB2P25686 324 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 GLRBP48167 497 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PEX6Q13608 980 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 CUL3Q13618 768 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 IRGCQ6NXR0 463 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 FAM171BQ6P995 826 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 TMEM154Q6P9G4 183 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 KBTBD2Q8IY47 623 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 MAPK15Q8TD08 544 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 UCMAQ8WVF2 138 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 SENP6Q9GZR1 1112 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 ILKAPQ9H0C8 392 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 RHOJQ9H4E5 214 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PPM1HQ9ULR3 514 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 ANKRD6Q9Y2G4 727 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 MRPL42Q9Y6G3 142 aaKnown RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 DPPA5A6NC42 116 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 FKBP6O75344 327 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 ZMPSTE24O75844 475 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 PDE5AO76074 875 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 UPP2O95045 317 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 AKR1A1P14550 325 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 CCNCP24863 283 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 ZNF33AQ06730 810 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 PCID2Q5JVF3 399 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 FRMD7Q6ZUT3 714 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 DEFB107AQ8IZN7 70 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 TSGA13Q96PP4 275 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 TMEM209Q96SK2 561 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 MTG1Q9BT17 334 aaPredicted RBP13.36□□□□□ -0.27
LDLR-203ENST00000535915 RUVBL2Q9Y230 463 aaKnown RBP13.36□□□□□ -0.27
LDLR-203ENST00000535915 GPR182O15218 404 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 ZBTB14O43829 449 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 AHSGP02765 367 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 CHRNGP07510 517 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 COX4I1P13073 169 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 CYP2C18P33260 490 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 TMCO4Q5TGY1 634 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 ACTRT2Q8TDY3 377 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 CCDC124Q96CT7 223 aaKnown RBP13.36□□□□□ -0.27
LDLR-203ENST00000535915 PPP1R36Q96LQ0 422 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 OR52B2Q96RD2 323 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 AGO3Q9H9G7 860 aaKnown RBP13.36□□□□□ -0.27
LDLR-203ENST00000535915 TCF7L2Q9NQB0 619 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 DNAJB4Q9UDY4 337 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 CDH22Q9UJ99 828 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 SH3BP1Q9Y3L3 701 aa13.36□□□□□ -0.27
LDLR-203ENST00000535915 COL4A4P53420 1690 aaPredicted RBP13.35□□□□□ -0.27
LDLR-203ENST00000535915 GOLGA8QA0A0J9YX86 632 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 GOLGA8OA6NCC3 632 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 GOLGA8NF8WBI6 632 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 CCNT2O60583 730 aaKnown RBP13.35□□□□□ -0.27
LDLR-203ENST00000535915 ANXA9O76027 345 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 SORBS2O94875 1100 aaKnown RBP13.35□□□□□ -0.27
LDLR-203ENST00000535915 VAPBO95292 243 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 MPSTP25325 297 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 GRIA4P48058 902 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 ITGA7Q13683 1181 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 LIPMQ5VYY2 423 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 BTBD8Q5XKL5 378 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 PKN3Q6P5Z2 889 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 ZYG11AQ6WRX3 759 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 LRRTM3Q86VH5 581 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 SLC41A1Q8IVJ1 513 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 ARHGAP12Q8IWW6 846 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 KCTD4Q8WVF5 259 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 PYDC1Q8WXC3 89 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 FICDQ9BVA6 458 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 TRIM62Q9BVG3 475 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 C1QTNF1Q9BXJ1 281 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 ARHGEF38Q9NXL2 777 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 SFMBT1Q9UHJ3 866 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 NEU3Q9UQ49 428 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 INPP5FQ9Y2H2 1132 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 NEMP1O14524 444 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 IRAK2O43187 625 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 CACNG3O60359 315 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 PAGE1O75459 146 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 ITGAXP20702 1163 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 YY1P25490 414 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 RPS6KA3P51812 740 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 KLF10Q13118 480 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 CTBP1Q13363 440 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 SLC12A1Q13621 1099 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 IZUMO2Q6UXV1 221 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 DENND6AQ8IWF6 608 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 PPHLN1Q8NEY8 458 aaKnown RBP13.35□□□□□ -0.27
LDLR-203ENST00000535915 OR10T2Q8NGX3 314 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 RDH11Q8TC12 318 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 SLC26A7Q8TE54 656 aa13.35□□□□□ -0.27
LDLR-203ENST00000535915 UPF1Q92900 1129 aaKnown RBP eCLIP13.35□□□□□ -0.272e-8■■■■■ 35.9
LDLR-203ENST00000535915 ZNF419Q96HQ0 510 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms