RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ARRDC3Q96B67 414 aa18.21■□□□□ 0.51
PCF11-206ENST00000533018 NLRC4Q9NPP4 1024 aa18.21■□□□□ 0.51
PCF11-206ENST00000533018 FAM207AQ9NSI2 230 aaPredicted RBP18.21■□□□□ 0.51
PCF11-206ENST00000533018 RAXQ9Y2V3 346 aa18.21■□□□□ 0.51
PCF11-206ENST00000533018 ARID1BQ8NFD5 2236 aaPredicted RBP18.21■□□□□ 0.5
PCF11-206ENST00000533018 TRPM6Q9BX84 2022 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 IGLV3-10A0A075B6K4 115 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 ILVBLA1L0T0 632 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 SDC3O75056 442 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 HNF1BP35680 557 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 RXRGP48443 463 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 ARL13BQ3SXY8 428 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 RWDD4Q6NW29 188 aaKnown RBP18.2■□□□□ 0.5
PCF11-206ENST00000533018 DPY19L3Q6ZPD9 716 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 ERN2Q76MJ5 926 aaKnown RBP18.2■□□□□ 0.5
PCF11-206ENST00000533018 TMPRSS12Q86WS5 348 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 ZNF677Q86XU0 584 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 PDCD7Q8N8D1 485 aaKnown RBP18.2■□□□□ 0.5
PCF11-206ENST00000533018 ENOX1Q8TC92 643 aaKnown RBP18.2■□□□□ 0.5
PCF11-206ENST00000533018 HNRNPLLQ8WVV9 542 aaKnown RBP18.2■□□□□ 0.5
PCF11-206ENST00000533018 PPP1R16AQ96I34 528 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 PCMTD1Q96MG8 357 aaPredicted RBP18.2■□□□□ 0.5
PCF11-206ENST00000533018 FZD3Q9NPG1 666 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 GPSM3Q9Y4H4 160 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 PCDHGA1Q9Y5H4 931 aa18.2■□□□□ 0.5
PCF11-206ENST00000533018 LEFTY1O75610 366 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 THEGLP0DJG4 465 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 SDC4P31431 198 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 SERPINH1P50454 418 aaKnown RBP18.19■□□□□ 0.5
PCF11-206ENST00000533018 CLDN6P56747 220 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 CDR2Q01850 454 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 GNA12Q03113 381 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 KRT31Q15323 416 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 C15orf59Q2T9L4 293 aaPredicted RBP18.19■□□□□ 0.5
PCF11-206ENST00000533018 NEK5Q6P3R8 708 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 ZNF783Q6ZMS7 281 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 HORMAD1Q86X24 394 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 SLC30A5Q8TAD4 765 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 RXFP2Q8WXD0 754 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 C11orf70Q9BRQ4 267 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 CALN1Q9BXU9 219 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 GANQ9H2C0 597 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 OR12D3Q9UGF7 316 aa18.19■□□□□ 0.5
PCF11-206ENST00000533018 NOCTQ9UK39 431 aaKnown RBP18.19■□□□□ 0.5
PCF11-206ENST00000533018 C1SP09871 688 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 CDK4P11802 303 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 AKT2P31751 481 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 SOX5P35711 763 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 SLC20A2Q08357 652 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 MAPK8IP2Q13387 824 aaPredicted RBP18.18■□□□□ 0.5
PCF11-206ENST00000533018 RAB6CQ53S08 254 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 HS1BP3Q53T59 392 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 FBXL19Q6PCT2 694 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 ARCQ7LC44 396 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 BNIPLQ7Z465 357 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 RYBPQ8N488 228 aaPredicted RBP18.18■□□□□ 0.5
PCF11-206ENST00000533018 HDAC8Q9BY41 377 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 CEP44Q9C0F1 390 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 RAB6CQ9H0N0 254 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 PPARGC1AQ9UBK2 798 aaKnown RBP18.18■□□□□ 0.5
PCF11-206ENST00000533018 DNAI1Q9UI46 699 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 FCF1Q9Y324 198 aaKnown RBP18.18■□□□□ 0.5
PCF11-206ENST00000533018 ATRXP46100 2492 aa18.18■□□□□ 0.5
PCF11-206ENST00000533018 MYLKQ15746 1914 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 RNF103O00237 685 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 GJB6O95452 261 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 CYP1A1P04798 512 aaPredicted RBP18.17■□□□□ 0.5
PCF11-206ENST00000533018 CKMT2P17540 419 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 HNRNPA2B1P22626 353 aaKnown RBP18.17■□□□□ 0.5
PCF11-206ENST00000533018 MMP8P22894 467 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 STAT1P42224 750 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 ACADVLP49748 655 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 NEK3P51956 506 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 FMO1Q01740 532 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 CAMK2BQ13554 666 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 COL28A1Q2UY09 1125 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 ZNF284Q2VY69 593 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 CCDC14Q49A88 953 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 CARD16Q5EG05 197 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 SFMBT2Q5VUG0 894 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 SEL1L3Q68CR1 1132 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 PCDH20Q8N6Y1 951 aaKnown RBP18.17■□□□□ 0.5
PCF11-206ENST00000533018 GPT2Q8TD30 523 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 HEPHQ9BQS7 1158 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 ZDHHC6Q9H6R6 413 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 LMBRD1Q9NUN5 540 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 SEPT11Q9NVA2 429 aaKnown RBP18.17■□□□□ 0.5
PCF11-206ENST00000533018 FANCLQ9NW38 375 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 ACTL7AQ9Y615 435 aa18.17■□□□□ 0.5
PCF11-206ENST00000533018 CHRNB2P17787 502 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ADRA1BP35368 520 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ACVRL1P37023 503 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ETFBP38117 255 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 NSFP46459 744 aaKnown RBP18.16■□□□□ 0.5
PCF11-206ENST00000533018 CCNHP51946 323 aaPredicted RBP18.16■□□□□ 0.5
PCF11-206ENST00000533018 CLDN2P57739 230 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ARF5P84085 180 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 DAB2P98082 770 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 SYCP1Q15431 976 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 HES3Q5TGS1 186 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms