RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 IGFBP2P18065 325 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 IL11P20809 199 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 CD72P21854 359 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 PRPH2P23942 346 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 GCH1P30793 250 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 SLC8A1P32418 973 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 ICAM3P32942 547 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 AGTR2P50052 363 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 COPB1P53618 953 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 MRPS35P82673 323 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 ZBED6P86452 979 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 EFNB1P98172 346 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 GOLGA8DPQ0D2H9 430 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 TMEM115Q12893 351 aaPredicted RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 PRPF4BQ13523 1007 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 BMPR2Q13873 1038 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 BYSLQ13895 437 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 CRYMQ14894 314 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 PTPRRQ15256 657 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 RASA2Q15283 850 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 TBC1D25Q3MII6 688 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 MTFR2Q6P444 385 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 KLHL35Q6PF15 583 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 SLC39A5Q6ZMH5 540 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 PARS2Q7L3T8 475 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 PRPF39Q86UA1 669 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 ARHGEF25Q86VW2 580 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 SCN4BQ8IWT1 228 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 LMNTD2Q8IXW0 634 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 NDUFAF2Q8N183 169 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 VPS52Q8N1B4 723 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 C12orf76Q8N812 135 aaPredicted RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 FRMD1Q8N878 549 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 ADPRHL1Q8NDY3 354 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 RAB40AQ8WXH6 277 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 POMGNT1Q8WZA1 660 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 ARHGEF2Q92974 986 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 SMARCE1Q969G3 411 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 ATP6V1E2Q96A05 226 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 KLHL29Q96CT2 875 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 REPS1Q96D71 796 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 PERPQ96FX8 193 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 KAZALD1Q96I82 304 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 PBKQ96KB5 322 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 CNDP2Q96KP4 475 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 CFAP53Q96M91 514 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 KLHL15Q96M94 604 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 MMS19Q96T76 1030 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 LBHD1Q9BQE6 289 aaPredicted RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 CLSTN3Q9BQT9 956 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 HDHD5Q9BXW7 423 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 MAK16Q9BXY0 300 aaKnown RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 SIL1Q9H173 461 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 KAT14Q9H8E8 782 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 SFXN1Q9H9B4 322 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 SLC22A11Q9NSA0 550 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 ABHD10Q9NUJ1 306 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 EHD3Q9NZN3 535 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 STK26Q9P289 416 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 PEMTQ9UBM1 199 aa3.5□□□□□ -1.85
CD44-229ENST00000528672 ZHX1Q9UKY1 873 aaPredicted RBP3.5□□□□□ -1.85
CD44-229ENST00000528672 FAM237BA0A1B0GVD1 139 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 A0A1W2PQM1 296 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 GCOM1H8Y6P7 765 aaPredicted RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 SMIM22K7EJ46 135 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 PPFIA2O75334 1257 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 PGM3O95394 542 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 CHRM4P08173 479 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 HSP90AB1P08238 724 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 APEHP13798 732 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 PKMP14618 531 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 ATF7P17544 494 aaPredicted RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 CDH2P19022 906 aaPredicted RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 GSTM2P28161 218 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 CASQ1P31415 396 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 CPOXP36551 454 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 EIF2DP41214 584 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 GRIA3P42263 894 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 GPC5P78333 572 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 OLR1P78380 273 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 PRAMEP78395 509 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 HMGN5P82970 282 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 IFT88Q13099 833 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 E2F5Q15329 346 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 SLC18A3Q16572 532 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 TMEM266Q2M3C6 531 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 AP5B1Q2VPB7 878 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 GXYLT1Q4G148 440 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 PCID2Q5JVF3 399 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 PLEKHS1Q5SXH7 462 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 NAPEPLDQ6IQ20 393 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 KLHL10Q6JEL2 608 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 TTI2Q6NXR4 508 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 RPUSD3Q6P087 351 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 CDC73Q6P1J9 531 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 TMEM81Q6P7N7 255 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 TMEM154Q6P9G4 183 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 NCEH1Q6PIU2 408 aa3.49□□□□□ -1.85
CD44-229ENST00000528672 KYAT3Q6YP21 454 aaKnown RBP3.49□□□□□ -1.85
CD44-229ENST00000528672 GALNT7Q86SF2 657 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms