RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SMCHD1A6NHR9 2005 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 RASA4BC9J798 803 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 DVL1O14640 695 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 CIDEAO60543 219 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 UNC5CO95185 931 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 AHSGP02765 367 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 TRIM49P0CI25 452 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 TRIM49CP0CI26 452 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 XRCC6P12956 609 aaKnown RBP eCLIP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 OSMP13725 252 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 PDCP20941 246 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 ADCYAP1R1P41586 468 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 STAT6P42226 847 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 SLC6A12P48065 614 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 LSSP48449 732 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 MTHFSP49914 203 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 DVL1P1P54792 670 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 RELQ04864 619 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 KHDRBS1Q07666 443 aaKnown RBP eCLIP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 RASGRF1Q13972 1273 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 BMS1Q14692 1282 aaKnown RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 CTU2Q2VPK5 515 aaKnown RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 KHDC1Q4VXA5 237 aaKnown RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 FASTKD1Q53R41 847 aaKnown RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 ALG10Q5BKT4 473 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 ALG10BQ5I7T1 473 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 CCBE1Q6UXH8 406 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 TFAP2EQ6VUC0 442 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 NT5DC4Q86YG4 428 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 LRRC57Q8N9N7 239 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 OR52N4Q8NGI2 321 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 KAT5Q92993 513 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 MOGAT1Q96PD6 335 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 SLC2A13Q96QE2 648 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 CSF3RQ99062 836 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 RNF26Q9BY78 433 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 LAT2Q9GZY6 243 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 TMX1Q9H3N1 280 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 EMC7Q9NPA0 242 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 ATAD3AQ9NVI7 634 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 ZNF581Q9P0T4 197 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 XPR1Q9UBH6 696 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 SIX4Q9UIU6 781 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 TUBE1Q9UJT0 475 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 RIMKLBQ9ULI2 386 aa-0.68□□□□□ -2.52
RNU6-539P-201ENST00000516665 CFAP69A5D8W1 941 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 CCDC85CA6NKD9 419 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 TIMM23O14925 209 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 KPNA6O60684 536 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 WISP3O95389 354 aaPredicted RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 PDIA4P13667 645 aaKnown RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 SELLP14151 372 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 FDPSP14324 419 aaKnown RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 CHATP28329 748 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 FMO4P31512 558 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 SLC16A2P36021 539 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 PTGDSP41222 190 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 RIPK4P57078 832 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 SNX16P57768 344 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 ERVK-21P61565 698 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 OCRLQ01968 901 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 PPARDQ03181 441 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 TNFAIP1Q13829 316 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 PNLIPRP3Q17RR3 467 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 AMZ1Q400G9 498 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 STXBP5Q5T5C0 1151 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 H1FOOQ8IZA3 346 aaPredicted RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 CPA6Q8N4T0 437 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 CD177Q8N6Q3 437 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 C11orf44Q8N8P7 122 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 BBS10Q8TAM1 723 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 STT3BQ8TCJ2 826 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 GIPC2Q8TF65 315 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 ZCCHC13Q8WW36 166 aaKnown RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 MTBPQ96DY7 904 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 PHYHIPLQ96FC7 376 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 GMPPAQ96IJ6 420 aaPredicted RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 C1orf147Q96MC9 270 aaPredicted RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 NKX1-2Q9UD57 310 aaPredicted RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 NIPSNAP3AQ9UFN0 247 aaPredicted RBP-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 IL17BQ9UHF5 180 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 NEU3Q9UQ49 428 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 MMACHCQ9Y4U1 282 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 PSAT1Q9Y617 370 aa-0.69□□□□□ -2.52
RNU6-539P-201ENST00000516665 A0A1B0GVM2 712 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 PRR32B1ATL7 298 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 PLD2O14939 933 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 GRPP07492 148 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 KLRC1P26715 233 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 PRKAR1BP31321 381 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 HNF4AP41235 474 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 LIFRP42702 1097 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 SLC5A3P53794 718 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 EXOSC9Q06265 439 aaKnown RBP-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 KCNA1Q09470 495 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 ELAVL2Q12926 359 aaKnown RBP-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 SEMA3BQ13214 749 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 C3AR1Q16581 482 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 AMOTQ4VCS5 1084 aa-0.7□□□□□ -2.52
RNU6-539P-201ENST00000516665 EIPR1Q53HC9 387 aa-0.7□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms