RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CDH15P55291 814 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH3BGRP55822 239 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF3BP55884 814 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HDAC4P56524 1084 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 WNT3P56703 355 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SOX8P57073 446 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 STARD6P59095 220 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTXN1P60606 82 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GMFBP60983 142 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAP2BP61225 183 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS13P62277 151 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPL7AP62424 266 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NOMO3P69849 1222 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCT2P78371 535 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP8B2P98198 1209 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ID2Q02363 134 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OCA2Q04671 838 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EXOSC9Q06265 439 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCN1BQ07699 218 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTN3Q08043 901 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDR1Q08345 913 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GOLGA8FQ08AF8 430 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GOLGA8DPQ0D2H9 430 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL30Q0D2K2 578 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GALNT2Q10471 571 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HYAL1Q12794 435 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 COX10Q12887 443 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LMAN2Q12907 356 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYO1EQ12965 1108 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RALGDSQ12967 914 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 COASYQ13057 564 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TARDBPQ13148 414 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPA4Q13156 261 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DUSP8Q13202 625 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBB3Q13509 450 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DCTN2Q13561 401 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP1A4Q13733 1029 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BAATQ14032 418 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BOP1Q14137 746 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGEF7Q14155 803 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 E2F2Q14209 437 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LASP1Q14847 261 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLCA4Q14CN2 919 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP2R5BQ15173 497 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPA1Q15181 289 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 E2F5Q15329 346 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS6KA2Q15349 733 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRADDQ15628 312 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBCEQ15813 527 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NTRK2Q16620 822 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBR1Q16650 682 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSTA3Q16772 222 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC5A9Q2M3M2 681 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF674Q2M3X9 581 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TYSND1Q2T9J0 566 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C15orf59Q2T9L4 293 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALG11Q2TAA5 492 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 WSCD2Q2TBF2 565 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MST1LQ2TV78 715 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KBTBD12Q3ZCT8 623 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FUT11Q495W5 492 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CRY2Q49AN0 593 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC40Q4G0X9 1142 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PABPC1LQ4VXU2 614 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP55Q53EZ4 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL22Q53GT1 634 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSP90AB3PQ58FF7 597 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BMP2KLQ5H9B9 411 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB41Q5JT25 222 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C9orf152Q5JTZ5 239 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLRA4Q5JXX5 417 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CBWD5Q5RIA9 395 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MANEAQ5SRI9 462 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C9orf50Q5SZB4 431 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEX35Q5T0J7 233 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OTUD3Q5T2D3 398 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMTC4Q5T4D3 741 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERMARDQ5T6L9 678 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PHF19Q5T6S3 580 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM69AQ5T7M9 428 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTC22Q5TAA0 569 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FNDC7Q5VTL7 733 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RRAGBQ5VZM2 374 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CST9LP1Q5W188 147 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAP1GAP2Q684P5 730 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLAG1Q6DJT9 500 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OTUD7BQ6GQQ9 843 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DGAT2L7PQ6IED9 249 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FSTL4Q6MZW2 842 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RINT1Q6NUQ1 792 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAF2Q6P1X5 1199 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DENND1BQ6P3S1 775 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM154Q6P9G4 183 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL35Q6PF15 583 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NCEH1Q6PIU2 408 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC2A7Q6PXP3 512 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC22A25Q6T423 547 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRSAM1Q6UWE0 723 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OLFM4Q6UX06 510 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSG1LQ6UXU4 331 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms