RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ITGAXP20702 1163 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 NMBRP28336 390 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 TRIM32Q13049 653 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 KATNAL1Q9BW62 490 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 MMADHCQ9H3L0 296 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 COG4Q9H9E3 785 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 CNGB3Q9NQW8 809 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 C20orf96Q9NUD7 363 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 DDX18Q9NVP1 670 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 SLC4A7Q9Y6M7 1214 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 ZCWPW2A0A1B0GU75 182 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 PHGDHO43175 533 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 MPSTP25325 297 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 GP5P40197 560 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 LHX1P48742 406 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 MED21Q13503 144 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 RPS27LQ71UM5 84 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 LENG8Q96PV6 779 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 NUF2Q9BZD4 464 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 ATXN3LQ9H3M9 355 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 NDFIP2Q9NV92 336 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 BFARQ9NZS9 450 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 TRPV2Q9Y5S1 764 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 MOCS2O96007 188 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 SOX11P35716 441 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 GARSP41250 739 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 PPIDQ08752 370 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 ANKRD20A4Q4UJ75 823 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 KYAT3Q6YP21 454 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 SDCCAG8Q86SQ7 713 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 OR10T2Q8NGX3 314 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 ARHGAP39Q9C0H5 1083 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 IL1BP01584 269 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 FGFR3P22607 806 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 CALRP27797 417 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 THPOP40225 353 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 UPP1Q16831 310 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 RAB41Q5JT25 222 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 SDHAF4Q5VUM1 108 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 SMARCD1Q96GM5 515 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 CATSPER2Q96P56 530 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 LRRC40Q9H9A6 602 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 COPG2Q9UBF2 871 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 TK2O00142 265 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 BIRC5O15392 142 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 JUNP05412 331 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 CNTFP26441 200 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 RANBP1P43487 201 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 CACNB2Q08289 660 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 PDCD2Q16342 344 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 CNTD1Q8N815 330 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 DQX1Q8TE96 717 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 OMDQ99983 421 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 COPS7BQ9H9Q2 264 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 SLC38A7Q9NVC3 462 aa16.8■□□□□ 0.28
CCDC88B-210ENST00000494566 TRPM7Q96QT4 1865 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 TMEM233B4DJY2 109 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 FBXO21O94952 628 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 VCLP18206 1134 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 ARL13BQ3SXY8 428 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 LIN52Q52LA3 116 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 TAF2Q6P1X5 1199 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 SNX32Q86XE0 403 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 NTAN1Q96AB6 310 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 RBBP8Q99708 897 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 APBA2Q99767 749 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 GBA3Q9H227 469 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 SEMA6AQ9H2E6 1030 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 PADI3Q9ULW8 664 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 CPA3P15088 417 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 RGS2P41220 211 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 POU6F1Q14863 301 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 SPANXN3Q5MJ09 141 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 KCNMB4Q86W47 210 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 TMA16Q96EY4 203 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 SCYL1Q96KG9 808 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 EPAS1Q99814 870 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 ETAA1Q9NY74 926 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 CDH9Q9ULB4 789 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 SLC39A10Q9ULF5 831 aa16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 RPL26L1Q9UNX3 145 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-210ENST00000494566 A0A096LPK6 155 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 HOXC8P31273 242 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 ITGA7Q13683 1181 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 LAMB3Q13751 1172 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 C11orf91Q3C1V1 193 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 KCTD11Q693B1 232 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 CYS1Q717R9 158 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 PDSS2Q86YH6 399 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 CDRT15Q96T59 188 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 CPNE1Q99829 537 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 KLHL4Q9C0H6 718 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 SENP6Q9GZR1 1112 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 CASS4Q9NQ75 786 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 DCDC2Q9UHG0 476 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 SF3B1O75533 1304 aaKnown RBP eCLIP16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 AKR1A1P14550 325 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms