RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 ZNF548Q8NEK5 533 aaPredicted RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 TMIEQ8NEW7 156 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 OR52K2Q8NGK3 314 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 TPCN2Q8NHX9 752 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 LMO3Q8TAP4 145 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 MAPK15Q8TD08 544 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 KAT5Q92993 513 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 BMFQ96LC9 184 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 CCDC114Q96M63 670 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 NOX5Q96PH1 765 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 SRRTQ9BXP5 876 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 HDAC8Q9BY41 377 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 ABCG4Q9H172 646 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 THAP9Q9H5L6 903 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 METTL14Q9HCE5 456 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 FZD3Q9NPG1 666 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 ARMCX3Q9UH62 379 aaPredicted RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 SLC12A6Q9UHW9 1150 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 SALL4Q9UJQ4 1053 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 ZFR2Q9UPR6 939 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 CNTN6Q9UQ52 1028 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 TBC1D30Q9Y2I9 924 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 ENTPD2Q9Y5L3 495 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 HS3ST3A1Q9Y663 406 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 DOCK4Q8N1I0 1966 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 SCN8AQ9UQD0 1980 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 BSNQ9UPA5 3926 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 SPTY2D1-AS1A0A0U1RR47 76 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 A0A1W2PQ27 194 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 A0A1W2PQ64 194 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 TPP1O14773 563 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 P4HA2O15460 535 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CLDN11O75508 207 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CALCAP01258 141 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 PRNPP04156 253 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 GLI1P08151 1106 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 SRCP12931 536 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 MYF5P13349 255 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ZNF18P17022 549 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CCR1P32246 355 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CHRNA3P32297 505 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 NUMBP49757 651 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 PMS1P54277 932 aaKnown RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 CLDN2P57739 230 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CENPCQ03188 943 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 LRRC63Q05C16 580 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CLN3Q13286 438 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ZNF177Q13360 481 aaPredicted RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 AUHQ13825 339 aaKnown RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 FZD2Q14332 565 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ARL13BQ3SXY8 428 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ANKRD40Q6AI12 368 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CCDC81Q6ZN84 652 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 RBM44Q6ZP01 1051 aaKnown RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 Q6ZSR6 202 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ERN2Q76MJ5 926 aaKnown RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 ZSCAN30Q86W11 494 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 OR2A12Q8NGT7 310 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 WDR48Q8TAF3 677 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 KLK6Q92876 244 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 RNF34Q969K3 372 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ARRDC3Q96B67 414 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ATXN7L3BQ96GX2 97 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 SPATA32Q96LK8 384 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 RPRD1AQ96P16 312 aaPredicted RBP8.39□□□□□ -1.07
USP39-216ENST00000490193 SLC2A13Q96QE2 648 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 MED15Q96RN5 788 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 TSG101Q99816 390 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 MYOCQ99972 504 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 CAAP1Q9H8G2 361 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ST7Q9NRC1 585 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 ASNSD1Q9NWL6 643 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 DNAJC28Q9NX36 388 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 VPS28Q9UK41 221 aa8.39□□□□□ -1.07
USP39-216ENST00000490193 TLN1Q9Y490 2541 aaKnown RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 POM121BA6NF01 834 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 E5RJQ4 531 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 H3BM21 787 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 KPNA3O00505 521 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 AQP9O43315 295 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 AP1G1O43747 822 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 NEBLO76041 1014 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ZNF202O95125 648 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ITGA2BP08514 1039 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 RABIFP47224 123 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 IRAK1P51617 712 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 PDX1P52945 283 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 CDH4P55283 916 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 KRT83P78385 493 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 KRT85P78386 507 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 CDK17Q00537 523 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 SRSF1Q07955 248 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP39-216ENST00000490193 FGL2Q14314 439 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ZNF658Q5TYW1 1059 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 KIAA1614Q5VZ46 1190 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 SEL1L3Q68CR1 1132 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 KIAA1161Q6NSJ0 714 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 DENND1BQ6P3S1 775 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 GUSBP11Q6P575 273 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms