RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 EFNA5P52803 228 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 PRAMEP78395 509 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 DGCR2P98153 550 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 FOXE3Q13461 319 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 PUM1Q14671 1186 aaKnown RBP eCLIP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 MED22Q15528 200 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 ANXA2RQ3ZCQ2 193 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 TTI2Q6NXR4 508 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 SLC30A6Q6NXT4 461 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 TMEM154Q6P9G4 183 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 KLHL35Q6PF15 583 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 IL20RBQ6UXL0 311 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 TFAP2DQ7Z6R9 452 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 RHPN2Q8IUC4 686 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 ARHGAP12Q8IWW6 846 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 REPS1Q96D71 796 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 MXD3Q9BW11 206 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 AP1M1Q9BXS5 423 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 FRMD8Q9BZ67 464 aaPredicted RBP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 GLIS2Q9BZE0 524 aaPredicted RBP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 ENTPD7Q9NQZ7 604 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 ATP8A2Q9NTI2 1148 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 GRHL1Q9NZI5 618 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 GIMAP2Q9UG22 337 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 RPS6KA6Q9UK32 745 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 INTS6Q9UL03 887 aaKnown RBP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 ST3GAL5Q9UNP4 418 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 DHDHQ9UQ10 334 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 CAPN7Q9Y6W3 813 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 FAM237BA0A1B0GVD1 139 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 A0A1W2PRG0 241 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 ARHGAP10A1A4S6 786 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 GRID2IPA4D2P6 1211 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 TTC36A6NLP5 189 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 BEST1O76090 585 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 TTKP33981 857 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 PPARGP37231 505 aaPredicted RBP5.47□□□□□ -1.53
UPF3B-203ENST00000478840 NNMTP40261 264 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 GABRB2P47870 512 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 SOX10P56693 466 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 EFEMP1Q12805 493 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 DPCR1Q3MIW9 517 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 C5orf22Q49AR2 442 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 RAB41Q5JT25 222 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 C10orf76Q5T2E6 689 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 SERTAD4-AS1Q5TG53 156 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 TXNDC8Q6A555 127 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 FAM160B2Q86V87 743 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 TAGAPQ8N103 731 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 GHDCQ8N2G8 530 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 FAM47BQ8NA70 645 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 HDAC7Q8WUI4 952 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 TMEM170AQ8WVE7 144 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 TEFMQ96QE5 360 aaKnown RBP5.47□□□□□ -1.53
UPF3B-203ENST00000478840 HEMGNQ9BXL5 484 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 KRTAP4-7Q9BYR0 210 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 SNTG1Q9NSN8 517 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 SPATS2LQ9NUQ6 558 aaKnown RBP5.47□□□□□ -1.53
UPF3B-203ENST00000478840 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.47□□□□□ -1.53
UPF3B-203ENST00000478840 NLKQ9UBE8 527 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 MORF4L1Q9UBU8 362 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 MAFFQ9ULX9 164 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 A4GNTQ9UNA3 340 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 ICKQ9UPZ9 632 aa5.47□□□□□ -1.53
UPF3B-203ENST00000478840 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.47□□□□□ -1.53
UPF3B-203ENST00000478840 REXO2Q9Y3B8 237 aaKnown RBP5.47□□□□□ -1.53
UPF3B-203ENST00000478840 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 TCRBV7S3A2A0A539 114 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 C1QTNF3-AMACRE9PGA6 284 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 RRHO14718 337 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 GCATO75600 419 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 JTBO76095 146 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 ZNF202O95125 648 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CSPG5O95196 566 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 DDAH2O95865 285 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CHRM5P08912 532 aaPredicted RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 SKIV2L2P42285 1042 aaKnown RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 RARRES1P49788 294 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 SNX16P57768 344 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CALD1Q05682 793 aaKnown RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 GOLGA8DPQ0D2H9 430 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 NIPAL4Q0D2K0 466 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CSTF3Q12996 717 aaKnown RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 IRF3Q14653 427 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 KPNB1Q14974 876 aaKnown RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 PFKFB3Q16875 520 aaPredicted RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 SPECC1Q5M775 1068 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 FAM171A1Q5VUB5 890 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 RPUSD3Q6P087 351 aaKnown RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 DHRS13Q6UX07 377 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 GRASPQ7Z6J2 395 aaPredicted RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 FAM9BQ8IZU0 186 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 AMER2Q8N7J2 671 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CCDC191Q8NCU4 936 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 DNAAF1Q8NEP3 725 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 SMARCE1Q969G3 411 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CAVIN3Q969G5 261 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 ZNF764Q96H86 408 aaPredicted RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms