RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ATP11CQ8NB49 1132 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 OR7D4Q8NG98 312 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GANQ9H2C0 597 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GPR27Q9NS67 375 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CHMP5Q9NZZ3 219 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NOCTQ9UK39 431 aaKnown RBP12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CA5BQ9Y2D0 317 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PAXBP1Q9Y5B6 917 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 WASF2Q9Y6W5 498 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RFPL3O75679 317 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PRNPP04156 253 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ZNF18P17022 549 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CHRNB2P17787 502 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ACP1P24666 158 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 EEF1GP26641 437 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 OR1E1P30953 314 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 JAM2P57087 298 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ARF5P84085 180 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RAPGEF1Q13905 1077 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RTP5Q14D33 572 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RAB6CQ53S08 254 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HSP90AA4PQ58FG1 418 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C6orf118Q5T5N4 469 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C22orf39Q6P5X5 142 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LINGO4Q6UY18 593 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DPY19L3Q6ZPD9 716 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TFAP2DQ7Z6R9 452 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ABI3BPQ7Z7G0 1075 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PDZD3Q86UT5 571 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HORMAD1Q86X24 394 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ZNF677Q86XU0 584 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PLPP6Q8IY26 295 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CPA5Q8WXQ8 436 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CENPIQ92674 756 aaPredicted RBP12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KLHDC7BQ96G42 594 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CFAP57Q96MR6 1250 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CEP44Q9C0F1 390 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RAB6CQ9H0N0 254 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RETREG1Q9H6L5 497 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KLHL11Q9NVR0 708 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NEU3Q9UQ49 428 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FARP1Q9Y4F1 1045 aaPredicted RBP12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SHROOM3Q8TF72 1996 aa12.52□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQU0 124 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TRIM38O00635 465 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SLC31A1O15431 190 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LEFTY1O75610 366 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CKMT2P17540 419 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MMP8P22894 467 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SERPINH1P50454 418 aaKnown RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CLDN6P56747 220 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GSCP56915 257 aaPredicted RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FMO1Q01740 532 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CCDC15Q0P6D6 951 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PTP4A2Q12974 167 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ZNF211Q13398 564 aaPredicted RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FGL2Q14314 439 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SOWAHCQ53LP3 525 aaPredicted RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ARSIQ5FYB1 569 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CDKAL1Q5VV42 579 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TAF3Q5VWG9 929 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ERN2Q76MJ5 926 aaKnown RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NLRP14Q86W24 1093 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM131BQ86XD5 332 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ENOX1Q8TC92 643 aaKnown RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SLC20A1Q8WUM9 679 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ISG20Q96AZ6 181 aaKnown RBP12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 IFT43Q96FT9 208 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 BMFQ96LC9 184 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CCDC114Q96M63 670 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ZYG11BQ9C0D3 744 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NRSN2Q9GZP1 204 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 OSBPL2Q9H1P3 480 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NDFIP2Q9NV92 336 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 IL36AQ9UHA7 158 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HS3ST3A1Q9Y663 406 aa12.51□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RP1P56715 2156 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MGAQ8IWI9 3026 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C2CD4BA6NLJ0 364 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM72CH0Y354 149 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GOLGA8SH3BPF8 625 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KPNA3O00505 521 aaPredicted RBP12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 EPHB6O15197 1021 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SIGLEC6O43699 453 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 AP1G1O43747 822 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 BNIP3LO60238 219 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SRGAP2O75044 1071 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 THEGLP0DJG4 465 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 UNGP13051 313 aaPredicted RBP12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 JUPP14923 745 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PRLRP16471 622 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DGKAP23743 735 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ADRA1BP35368 520 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CDR2Q01850 454 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GNA12Q03113 381 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TARDBPQ13148 414 aaKnown RBP eCLIP12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CCDC14Q49A88 953 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CCDC157Q569K6 752 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HES3Q5TGS1 186 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM72AQ5TYM5 149 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms