RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 RPN2P04844 631 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 VAV1P15498 845 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 NAGLUP54802 743 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 MTA1Q13330 715 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 GALNT3Q14435 633 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 UNC93AQ86WB7 457 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 PTGR2Q8N8N7 351 aaPredicted RBP17.39■□□□□ 0.38
PTPRF-209ENST00000438120 MYOCQ99972 504 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 C2orf49Q9BVC5 232 aaPredicted RBP17.39■□□□□ 0.38
PTPRF-209ENST00000438120 PHACTR1Q9C0D0 580 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 SLC9A8Q9Y2E8 581 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 UBIAD1Q9Y5Z9 338 aa17.39■□□□□ 0.38
PTPRF-209ENST00000438120 TRAV19A0A0A6YYK7 116 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 RPL22P35268 128 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 TALDO1P37837 337 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 MRPS22P82650 360 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 IRF8Q02556 426 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 SLC34A1Q06495 639 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 KIAA1324Q6UXG2 1013 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 LGMNQ99538 433 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 ST3GAL5Q9UNP4 418 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 NEK3P51956 506 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 RPL7AP62424 266 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 SH3RF1Q7Z6J0 888 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 TTC7BQ86TV6 843 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 KLHL25Q9H0H3 589 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 ZNHIT2Q9UHR6 403 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 GPSM3Q9Y4H4 160 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 FGF10O15520 208 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 LTA4HP09960 611 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 PAICSP22234 425 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 PABPC1LQ4VXU2 614 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 NOMO2Q5JPE7 1267 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 RSBN1Q5VWQ0 802 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 RBM23Q86U06 439 aaKnown RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 BHLHE22Q8NFJ8 381 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-209ENST00000438120 MIEF2Q96C03 454 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 SH3GL2Q99962 352 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 NRDE2Q9H7Z3 1164 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 CTNNB1P35222 781 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 POLD2P49005 469 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 ADRM1Q16186 407 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 NRF1Q16656 503 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 FOXR1Q6PIV2 292 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 MKL1Q969V6 931 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 ZFP14Q9HCL3 533 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 TMPRSS4Q9NRS4 437 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 ENTPD4Q9Y227 616 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 BTRCQ9Y297 605 aa17.39■□□□□ 0.37
PTPRF-209ENST00000438120 PDE2AO00408 941 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-209ENST00000438120 TRIM24O15164 1050 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CYP1A2P05177 515 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 MAPK11Q15759 364 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 PROX1Q92786 737 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SEMA3CQ99985 751 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SERHL2Q9H4I8 314 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SERHLQ9NQF3 203 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 BMP10O95393 424 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CHKAP35790 457 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 AP5B1Q2VPB7 878 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CYP4X1Q8N118 509 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 TRPM4Q8TD43 1214 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 TK2O00142 265 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CHADO15335 359 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 EPN2O95208 641 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CDK7P50613 346 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SPIDRQ14159 915 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 STXBP5Q5T5C0 1151 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CNSTQ6PJW8 725 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 NEK10Q6ZWH5 1172 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 DNAJC19Q96DA6 116 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 UGT2B28Q9BY64 529 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 IKZF4Q9H2S9 585 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SOHLH2Q9NX45 425 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 KLHL3Q9UH77 587 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 CDH9Q9ULB4 789 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 ALADP13716 330 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 PRKAA2P54646 552 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 FRG1Q14331 258 aaKnown RBP17.38■□□□□ 0.37
PTPRF-209ENST00000438120 KYAT3Q6YP21 454 aaKnown RBP17.38■□□□□ 0.37
PTPRF-209ENST00000438120 EFCAB3Q8N7B9 438 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 RMND5BQ96G75 393 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SLC4A9Q96Q91 983 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 EPS8L2Q9H6S3 715 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 SF3B1O75533 1304 aaKnown RBP eCLIP17.38■□□□□ 0.378e-8■■■■■ 126.3
PTPRF-209ENST00000438120 ZNF839A8K0R7 811 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 YDJCA8MPS7 323 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 FKBP1AP62942 108 aaKnown RBP17.38■□□□□ 0.37
PTPRF-209ENST00000438120 FMO1Q01740 532 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 TREML2Q5T2D2 321 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 ZYG11BQ9C0D3 744 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 ASAH2Q9NR71 780 aa17.38■□□□□ 0.37
PTPRF-209ENST00000438120 C1orf232A0A0U1RR37 186 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 AVILO75366 819 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 SNRPD1P62314 119 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 TTMPQ5BVD1 217 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 NOL9Q5SY16 702 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 EEF1DP3Q658K8 133 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 RNF44Q7L0R7 432 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 CERS2Q96G23 380 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms