RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 AURKAO14965 403 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 BUD23O43709 281 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 KLHL41O60662 606 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CSPG5O95196 566 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 VAPBO95292 243 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CHRNGP07510 517 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ARSAP15289 507 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CSF2RAP15509 400 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 SYN1P17600 705 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 PGAM1P18669 254 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CALB2P22676 271 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 SKIV2L2P42285 1042 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 GLUD2P49448 558 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TSPY1Q01534 308 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 RCN1Q15293 331 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ANKRD20A4Q4UJ75 823 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TEDDM1Q5T9Z0 273 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ATG16L1Q676U5 607 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.64□□□□□ -0.871e-8■■■■□ 26.3
CUX1-206ENST00000437600 MAVSQ7Z434 540 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 RNF135Q8IUD6 432 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TEX9Q8N6V9 391 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 DQX1Q8TE96 717 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 KCTD13Q8WZ19 329 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TRIM43Q96BQ3 446 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 CCDC124Q96CT7 223 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 OSBPL1AQ9BXW6 950 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 C11orf49Q9H6J7 331 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 WDR55Q9H6Y2 383 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 RNPEPL1Q9HAU8 725 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 DMAP1Q9NPF5 467 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 FIS1Q9Y3D6 152 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 HBS1LQ9Y450 684 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 WASF2Q9Y6W5 498 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 MICAL3Q7RTP6 2002 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ALPK3Q96L96 1907 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 A0A096LPK6 155 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TK2O00142 265 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ATP5HO75947 161 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TSHRP16473 764 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 GARSP41250 739 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 ATXN3P54252 364 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 EPHB1P54762 984 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TAF11Q15544 211 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CCDC6Q16204 474 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 FAM26DQ5JW98 314 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 MBLAC2Q68D91 279 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 FAM171BQ6P995 826 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 DCLRE1AQ6PJP8 1040 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 BZW1Q7L1Q6 419 aaKnown RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 C14orf80Q86SX3 495 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 LDB1Q86U70 411 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 MAB21L3Q8N8X9 362 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TTC16Q8NEE8 873 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ZSCAN18Q8TBC5 510 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 CASP10Q92851 521 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 SUSD3Q96L08 255 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 NMUR1Q9HB89 426 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CNGB3Q9NQW8 809 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 OSER1Q9NX31 292 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 MTF2Q9Y483 593 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 M0QZQ0 153 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 TBX10O75333 385 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 ALDH1A2O94788 518 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 C2P06681 752 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 USP46P62068 366 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 ITKQ08881 620 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 BFSP2Q13515 415 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 PAFAH1B3Q15102 231 aaKnown RBP9.63□□□□□ -0.87
CUX1-206ENST00000437600 ESRP1Q6NXG1 681 aaKnown RBP9.63□□□□□ -0.87
CUX1-206ENST00000437600 COLGALT2Q8IYK4 626 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 THEM5Q8N1Q8 247 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 PHTF2Q8N3S3 785 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 ZNF781Q8N8C0 355 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.63□□□□□ -0.87
CUX1-206ENST00000437600 MAPK15Q8TD08 544 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 NRG4Q8WWG1 115 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 INPP5DQ92835 1189 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 VWCEQ96DN2 955 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 KLHL5Q96PQ7 755 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 TTC1Q99614 292 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 SH3GL3Q99963 347 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 SUDS3Q9H7L9 328 aaPredicted RBP9.63□□□□□ -0.87
CUX1-206ENST00000437600 TRIOO75962 3097 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 ENPP3O14638 875 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 PAGE1O75459 146 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 PDE5AO76074 875 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 RALBP11234 206 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 RPL17P18621 184 aaKnown RBP9.63□□□□□ -0.87
CUX1-206ENST00000437600 MPP1Q00013 466 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 GRM3Q14832 879 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 CNGA3Q16281 694 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 ARL13BQ3SXY8 428 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 RAB41Q5JT25 222 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 CAPRIN2Q6IMN6 1127 aaKnown RBP9.63□□□□□ -0.87
CUX1-206ENST00000437600 ANKRD33Q7Z3H0 272 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 KCNMB4Q86W47 210 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 MIB1Q86YT6 1006 aa9.63□□□□□ -0.87
CUX1-206ENST00000437600 PIWIL2Q8TC59 973 aaKnown RBP9.63□□□□□ -0.87
CUX1-206ENST00000437600 MARK4Q96L34 752 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms