RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 KIAA0355O15063 1070 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 SUPT3HO75486 399 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 IFNA8P32881 189 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 TTC7BQ86TV6 843 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 MLPHQ9BV36 600 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-207ENST00000429896 CFHR5Q9BXR6 569 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 HAPLN2Q9GZV7 340 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 CLIC5Q9NZA1 410 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 SAE1Q9UBE0 346 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-207ENST00000429896 FBXW11Q9UKB1 542 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 CDV3Q9UKY7 258 aaKnown RBP13.12□□□□□ -0.31
PTCH1-207ENST00000429896 RNF103-CHMP3A0A140T963 221 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 EPHX1P07099 455 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 MAGEA10P43363 369 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-207ENST00000429896 THOP1P52888 689 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 PTAR1Q7Z6K3 402 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-207ENST00000429896 KATNBL1Q9H079 304 aa13.12□□□□□ -0.31
PTCH1-207ENST00000429896 CCDC185Q8N715 623 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SNX31Q8N9S9 440 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SEMA3CQ99985 751 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 MIR1-1HGQ9H1L0 117 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 PRDM12Q9H4Q4 367 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 EML4Q9HC35 981 aaKnown RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 ARHGEF4Q9NR80 690 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 TDP1Q9NUW8 608 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SERPINH1P50454 418 aaKnown RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 PWP1Q13610 501 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 TAF5Q15542 800 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 FAM124AQ86V42 546 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 TMEM209Q96SK2 561 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SMOQ99835 787 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 PNPLA8Q9NP80 782 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 ARHGAP26Q9UNA1 814 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 AARSP49588 968 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 BPIFB1Q8TDL5 484 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 STRA6Q9BX79 667 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 RUBCNLQ9H714 662 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 C10orf88Q9H8K7 445 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 FBXO10Q9UK96 956 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 AJAP1Q9UKB5 411 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 ERI2A8K979 691 aaKnown RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 MYO1DO94832 1006 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 TBX18O95935 607 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SNRPAP09012 282 aaKnown RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 WASP42768 502 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 CUL3Q13618 768 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 PDGFRLQ15198 375 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 LRRC36Q1X8D7 754 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 DOK6Q6PKX4 331 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 BBS12Q6ZW61 710 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 WDR75Q8IWA0 830 aaKnown RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 ZSCAN18Q8TBC5 510 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-207ENST00000429896 WFIKKN2Q8TEU8 576 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SPACA7Q96KW9 195 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 CSPG4P5Q96PW8 444 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 TRIM16O95361 564 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 BRAFP15056 766 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 NFKB1P19838 968 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SCNN1AP37088 669 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 DPYSL3Q14195 570 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 AP1ARQ63HQ0 302 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 SLC39A11Q8N1S5 342 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 ECT2Q9H8V3 914 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 PSD3Q9NYI0 1048 aa13.11□□□□□ -0.31
PTCH1-207ENST00000429896 MTA2O94776 668 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 L1CAMP32004 1257 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 LONRF1Q17RB8 773 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 MFSD4BQ5TF39 518 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 TRABDQ9H4I3 376 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 AASDHPPTQ9NRN7 309 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 ETNK2Q9NVF9 386 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 SCN4AP35499 1836 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 ARHGAP10A1A4S6 786 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 RHOP08100 348 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 ADH5P11766 374 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 YBEYP58557 167 aaPredicted RBP13.1□□□□□ -0.31
PTCH1-207ENST00000429896 MPP3Q13368 585 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 TJAP1Q5JTD0 557 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 AADACL2Q6P093 401 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 CASKIN2Q8WXE0 1202 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 NECTIN4Q96NY8 510 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 C17orf80Q9BSJ5 609 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 SYTL2Q9HCH5 934 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 FZD10Q9ULW2 581 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 MYO1GB0I1T2 1018 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 EIF3HO15372 352 aaKnown RBP eCLIP13.1□□□□□ -0.31
PTCH1-207ENST00000429896 IRAK2O43187 625 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 ZW10O43264 779 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 PGAM1P18669 254 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 KCNA5P22460 613 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 PSMB4P28070 264 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 ZBTB17Q13105 803 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 RRM2BQ7LG56 351 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 PHACTR4Q8IZ21 702 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 NOA1Q8NC60 698 aaKnown RBP13.1□□□□□ -0.31
PTCH1-207ENST00000429896 MAGEB10Q96LZ2 347 aaPredicted RBP13.1□□□□□ -0.31
PTCH1-207ENST00000429896 CHST7Q9NS84 486 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 LAMA4Q16363 1823 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 QSER1Q2KHR3 1735 aa13.1□□□□□ -0.31
PTCH1-207ENST00000429896 DNALI1O14645 258 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms