RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 CROCCQ5TZA2 2017 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 HCRTO43612 131 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 LCP1P13796 627 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 HDCP19113 662 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 ADSLP30566 484 aaPredicted RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 SFSWAPQ12872 951 aaKnown RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 CBX3Q13185 183 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 GRM3Q14832 879 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 ANKDD1AQ495B1 522 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 CERCAMQ5T4B2 595 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 NBPF12Q5TAG4 269 aaPredicted RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 ELMSAN1Q6PJG2 1045 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 DHRS4L2Q6PKH6 230 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 TMEM135Q86UB9 458 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 HERC6Q8IVU3 1022 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 CPNE9Q8IYJ1 553 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 DCUN1D5Q9BTE7 237 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 OSBPL6Q9BZF3 934 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 UNKQ9C0B0 810 aaKnown RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 NOL11Q9H8H0 719 aaKnown RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 SCN4AP35499 1836 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 SSC5DA1L4H1 1573 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 CCDC78A2IDD5 438 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 TMX2-CTNND1H3BSU7 103 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 VARSP26640 1264 aaKnown RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 EPHX2P34913 555 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 PDAP1Q13442 181 aaKnown RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 Q6ZNX1 250 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 CLVS1Q8IUQ0 354 aaPredicted RBP21.59■■□□□ 1.05
USP48-205ENST00000421625 DNAAF3Q8N9W5 541 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 KCTD4Q8WVF5 259 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 LPGAT1Q92604 370 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 APBA2Q99767 749 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 SQORQ9Y6N5 450 aa21.59■■□□□ 1.05
USP48-205ENST00000421625 SH3PXD2BA1X283 911 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 H0YJX3 145 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 HTRA2O43464 458 aaPredicted RBP21.58■■□□□ 1.05
USP48-205ENST00000421625 CKMT2P17540 419 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 KCNMB4Q86W47 210 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 LZTR1Q8N653 840 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 ZNF280CQ8ND82 737 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 FAM110BQ8TC76 370 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 APOL2Q9BQE5 337 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 PLGRKTQ9HBL7 147 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 DPP3Q9NY33 737 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 SUCOQ9UBS9 1254 aaKnown RBP21.58■■□□□ 1.05
USP48-205ENST00000421625 SH3GLB1Q9Y371 365 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 PCDHGA4Q9Y5G9 962 aa21.58■■□□□ 1.05
USP48-205ENST00000421625 TFPTP0C1Z6 253 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 GLUD2P49448 558 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 PRAMEP78395 509 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 RHDQ02161 417 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 DGKDQ16760 1214 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 PATL1Q86TB9 770 aaKnown RBP21.58■■□□□ 1.04
USP48-205ENST00000421625 FAM47BQ8NA70 645 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 FAM167AQ96KS9 214 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 VTI1BQ9UEU0 232 aa21.58■■□□□ 1.04
USP48-205ENST00000421625 BPTFQ12830 3046 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 HSDL1Q3SXM5 330 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 CCNYL1Q8N7R7 359 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 C7orf31Q8N865 590 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 CHRAC1Q9NRG0 131 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 RUVBL2Q9Y230 463 aaKnown RBP21.57■■□□□ 1.04
USP48-205ENST00000421625 FIS1Q9Y3D6 152 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 SYNJ2BP-COX16A0A087WUM0 186 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 TIMM44O43615 452 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 PTPRAP18433 802 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 Q3C1V9 767 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 SPATA6LQ8N4H0 392 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 SNX31Q8N9S9 440 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 DNERQ8NFT8 737 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 HMGCLL1Q8TB92 370 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 ISOC1Q96CN7 298 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 CLK4Q9HAZ1 481 aaKnown RBP21.57■■□□□ 1.04
USP48-205ENST00000421625 DUS2Q9NX74 493 aaKnown RBP21.57■■□□□ 1.04
USP48-205ENST00000421625 BFARQ9NZS9 450 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 COX16Q9P0S2 106 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 KLHL8Q9P2G9 620 aaPredicted RBP21.57■■□□□ 1.04
USP48-205ENST00000421625 IGSF9Q9P2J2 1179 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 MID2Q9UJV3 735 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 TLK1Q9UKI8 766 aa21.57■■□□□ 1.04
USP48-205ENST00000421625 CNOT6Q9ULM6 557 aaKnown RBP21.57■■□□□ 1.04
USP48-205ENST00000421625 PRORSD1PA6NEY8 169 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 DLX3O60479 287 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 CABYRO75952 493 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 RBP5P82980 135 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 EFCAB12Q6NXP0 572 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 CROCCP3Q8IVE0 287 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 FSTL5Q8N475 847 aaPredicted RBP21.56■■□□□ 1.04
USP48-205ENST00000421625 KDM1BQ8NB78 822 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 NDRG1Q92597 394 aaKnown RBP21.56■■□□□ 1.04
USP48-205ENST00000421625 DPEP3Q9H4B8 488 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 ZNHIT2Q9UHR6 403 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 FZD10Q9ULW2 581 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 SDHDO14521 159 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 TPH1P17752 444 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 HK2P52789 917 aa21.56■■□□□ 1.04
USP48-205ENST00000421625 ZNF280AP59817 542 aaPredicted RBP21.56■■□□□ 1.04
USP48-205ENST00000421625 PITX1P78337 314 aaPredicted RBP21.56■■□□□ 1.04
USP48-205ENST00000421625 ZNF460Q14592 562 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms