RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 ADAM17P78536 824 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 MED21Q13503 144 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 LSM12Q3MHD2 195 aaKnown RBP25.71■■□□□ 1.71
C9orf40-201ENST00000376854 ARL13AQ5H913 290 aaPredicted RBP25.71■■□□□ 1.71
C9orf40-201ENST00000376854 RAB41Q5JT25 222 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 GALNT15Q8N3T1 639 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 UPF1Q92900 1129 aaKnown RBP eCLIP25.71■■□□□ 1.71
C9orf40-201ENST00000376854 SCYL1Q96KG9 808 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 CNDP1Q96KN2 507 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 CCDC28BQ9BUN5 200 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 RHOJQ9H4E5 214 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 CPA4Q9UI42 421 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 LRIG2O94898 1065 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 PIGNO95427 931 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 F9P00740 461 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 SBK3P0C264 359 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 EPHA3P29320 983 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 GLRBP48167 497 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 BEX3Q00994 111 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 EP400NLQ6ZTU2 488 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 SNX32Q86XE0 403 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 PARK7Q99497 189 aaKnown RBP25.71■■□□□ 1.71
C9orf40-201ENST00000376854 KIFC1Q9BW19 673 aa25.71■■□□□ 1.71
C9orf40-201ENST00000376854 G3BP2Q9UN86 482 aaKnown RBP25.71■■□□□ 1.71
C9orf40-201ENST00000376854 TIMM13Q9Y5L4 95 aaPredicted RBP25.71■■□□□ 1.71
C9orf40-201ENST00000376854 RGSL1A5PLK6 1076 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 AP3B1O00203 1094 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 KIF3CO14782 793 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 CABYRO75952 493 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 AVPR1AP37288 418 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 PPM1LQ5SGD2 360 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 OTOP3Q7RTS5 596 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 ZSCAN18Q8TBC5 510 aaPredicted RBP25.7■■□□□ 1.71
C9orf40-201ENST00000376854 RRN3Q9NYV6 651 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 PACSIN3Q9UKS6 424 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 RUVBL2Q9Y230 463 aaKnown RBP25.7■■□□□ 1.71
C9orf40-201ENST00000376854 DOCK3Q8IZD9 2030 aa25.7■■□□□ 1.71
C9orf40-201ENST00000376854 CRYBB1P53674 252 aaPredicted RBP25.7■■□□□ 1.7
C9orf40-201ENST00000376854 NAGLUP54802 743 aa25.7■■□□□ 1.7
C9orf40-201ENST00000376854 POLE2P56282 527 aa25.7■■□□□ 1.7
C9orf40-201ENST00000376854 LINC00523Q86TU6 105 aa25.7■■□□□ 1.7
C9orf40-201ENST00000376854 USP33Q8TEY7 942 aa25.7■■□□□ 1.7
C9orf40-201ENST00000376854 KCTD4Q8WVF5 259 aa25.7■■□□□ 1.7
C9orf40-201ENST00000376854 NUF2Q9BZD4 464 aa25.7■■□□□ 1.7
C9orf40-201ENST00000376854 TSPYL2Q9H2G4 693 aaPredicted RBP25.7■■□□□ 1.7
C9orf40-201ENST00000376854 PRPF19Q9UMS4 504 aaKnown RBP25.7■■□□□ 1.7
C9orf40-201ENST00000376854 CASQ2O14958 399 aaPredicted RBP25.69■■□□□ 1.7
C9orf40-201ENST00000376854 TFEBP19484 476 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 CXCR3P49682 368 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 PSEN2P49810 448 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 HK2P52789 917 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 PRKAA2P54646 552 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 C16orf89Q6UX73 402 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 CNTD1Q8N815 330 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 KYQ8NBH2 561 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 STK39Q9UEW8 545 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 GRID2O43424 1007 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 DDHD2O94830 711 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 SLC35E2BP0CK96 405 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 VCLP18206 1134 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 LHX1P48742 406 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 ZNF135P52742 658 aaPredicted RBP25.69■■□□□ 1.7
C9orf40-201ENST00000376854 ROR2Q01974 943 aaKnown RBP25.69■■□□□ 1.7
C9orf40-201ENST00000376854 PRKAA1Q13131 559 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 SLC12A1Q13621 1099 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 TMC7Q7Z402 723 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 DPF3Q92784 378 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 SERPINI1Q99574 410 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 SH3GL3Q99963 347 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 ZDHHC2Q9UIJ5 367 aa25.69■■□□□ 1.7
C9orf40-201ENST00000376854 MYL3P08590 195 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 CALRP27797 417 aaKnown RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 DLG1Q12959 904 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 CCL14Q16627 93 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 MMEL1Q495T6 779 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 CWF19L1Q69YN2 538 aaKnown RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 BHLHA9Q7RTU4 235 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 SLC41A1Q8IVJ1 513 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 ST13P4Q8IZP2 240 aaPredicted RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 DSELQ8IZU8 1212 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 RP9Q8TA86 221 aaKnown RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 AHSGP02765 367 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 DNAJB2P25686 324 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 GABRB3P28472 473 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 PPARGP37231 505 aaPredicted RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 CYLC2Q14093 348 aaPredicted RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 GRAMD1BQ3KR37 738 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 MAP3K21Q5TCX8 1036 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 SPRYD7Q5W111 196 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 FSTL5Q8N475 847 aaPredicted RBP25.68■■□□□ 1.7
C9orf40-201ENST00000376854 SPATA22Q8NHS9 363 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 STYXQ8WUJ0 223 aa25.68■■□□□ 1.7
C9orf40-201ENST00000376854 MEIS3P2A8K0S8 358 aa25.67■■□□□ 1.7
C9orf40-201ENST00000376854 HHLA1C9JL84 531 aa25.67■■□□□ 1.7
C9orf40-201ENST00000376854 PSMD3O43242 534 aa25.67■■□□□ 1.7
C9orf40-201ENST00000376854 PEX1O43933 1283 aa25.67■■□□□ 1.7
C9orf40-201ENST00000376854 ZNF865P0CJ78 1059 aaPredicted RBP25.67■■□□□ 1.7
C9orf40-201ENST00000376854 LCA5Q86VQ0 697 aa25.67■■□□□ 1.7
C9orf40-201ENST00000376854 MFN1Q8IWA4 741 aa25.67■■□□□ 1.7
C9orf40-201ENST00000376854 CENPLQ8N0S6 344 aaPredicted RBP25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms