RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 GPSM1Q86YR5 675 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 THAP2Q9H0W7 228 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 XKR8Q9H6D3 395 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 URADA6NGE7 173 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 H3BNH8 94 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 PROCP04070 461 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 LRRC70Q7Z2Q7 622 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 KAT2BQ92831 832 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 TEFMQ96QE5 360 aaKnown RBP11.78□□□□□ -0.52
VPS13A-205ENST00000376636 HGH1Q9BTY7 390 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 TMEM106CQ9BVX2 250 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 KCNN2Q9H2S1 579 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 SP140LQ9H930 580 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 SMURF2Q9HAU4 748 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 HOXA2O43364 376 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 MLYCDO95822 493 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 DBTP11182 482 aaKnown RBP11.78□□□□□ -0.52
VPS13A-205ENST00000376636 NR4A1P22736 598 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 MAGEA12P43365 314 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 HYIQ5T013 277 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 OR8H3Q8N146 312 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 LMAN2LQ9H0V9 348 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 APOL3O95236 402 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 PSMA1P25786 263 aaKnown RBP11.78□□□□□ -0.52
VPS13A-205ENST00000376636 TUBA1BP68363 451 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 GLRA4Q5JXX5 417 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 TUBA1AQ71U36 451 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 GLT6D1Q7Z4J2 308 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 LDHDQ86WU2 507 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 ZNF548Q8NEK5 533 aaPredicted RBP11.78□□□□□ -0.52
VPS13A-205ENST00000376636 CARD8Q9Y2G2 431 aa11.78□□□□□ -0.52
VPS13A-205ENST00000376636 UBA1P22314 1058 aaKnown RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 LHX1P48742 406 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 CDKL1Q00532 357 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 SCN1BQ07699 218 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 PDK3Q15120 406 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 BHMTQ93088 406 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 PHB2Q99623 299 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 MARCH7Q9H992 704 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 TLR8Q9NR97 1041 aaKnown RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 C6orf222P0C671 652 aaPredicted RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 UBE2Q1Q7Z7E8 422 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 PLCZ1Q86YW0 608 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 ZDHHC17Q8IUH5 632 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 BRSK2Q8IWQ3 736 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 NELL1Q92832 810 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 COLEC11Q9BWP8 271 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 CCDC86Q9H6F5 360 aaKnown RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 TRPV5Q9NQA5 729 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 THG1LQ9NWX6 298 aaKnown RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 ZMYM5Q9UJ78 669 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 PSMD13Q9UNM6 376 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 TRDMT1O14717 391 aaKnown RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 MSH4O15457 936 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 MYBL2P10244 700 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 KLRC1P26715 233 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 STOMP27105 288 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 IST1P53990 364 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 BOP1Q14137 746 aaKnown RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 SAPCD2Q86UD0 394 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 MB21D2Q8IYB1 491 aaPredicted RBP11.77□□□□□ -0.52
VPS13A-205ENST00000376636 FBXW8Q8N3Y1 598 aa11.77□□□□□ -0.52
VPS13A-205ENST00000376636 FAM153BP0C7A2 387 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 CCNYL3P0C7X3 344 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 CSH1P0DML2 217 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 CSH2P0DML3 217 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ECHS1P30084 290 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 FXR1P51114 621 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS13A-205ENST00000376636 PPIL2Q13356 520 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 SETMARQ53H47 684 aaPredicted RBP11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ANKDD1BA6NHY2 528 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 RBAK-RBAKDNI3L0D1 243 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 SLC9A4Q6AI14 798 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 EFCAB12Q6NXP0 572 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 TRIM40Q6P9F5 258 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 MND1Q9BWT6 205 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 FBXO44Q9H4M3 255 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 SERPINA3P01011 423 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 MAPK10P53779 464 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ANO7Q6IWH7 933 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ATL1Q8WXF7 558 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 NEUROD4Q9HD90 331 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 WDR62O43379 1518 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ZNF208O43345 1280 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 CCNCP24863 283 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ACSM2AQ08AH3 577 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 MARC1Q5VT66 337 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ACSM2BQ68CK6 577 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 FAM126AQ9BYI3 521 aaPredicted RBP11.77□□□□□ -0.53
VPS13A-205ENST00000376636 PIK3R6Q5UE93 754 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 DHDDSQ86SQ9 333 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 OR8H1Q8NGG4 311 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 TTLL2Q9BWV7 592 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 EXO5Q9H790 373 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 GJB4Q9NTQ9 266 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 ABLIM1O14639 778 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 MYBP10242 640 aa11.77□□□□□ -0.53
VPS13A-205ENST00000376636 MBL2P11226 248 aaPredicted RBP11.77□□□□□ -0.53
VPS13A-205ENST00000376636 GRHL2Q6ISB3 625 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms