RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 LRRC40Q9H9A6 602 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 KLHL8Q9P2G9 620 aaPredicted RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 VANGL2Q9ULK5 521 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 TSC22D4Q9Y3Q8 395 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ZCWPW2A0A1B0GU75 182 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 MAGEA12P43365 314 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 OAZ1P54368 228 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ATP1A4Q13733 1029 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 GLRA4Q5JXX5 417 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ERI1Q8IV48 349 aaKnown RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 MICALL2Q8IY33 904 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 CPNE9Q8IYJ1 553 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ZBED3Q96IU2 234 aaPredicted RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 OLAHQ9NV23 265 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 VPS28Q9UK41 221 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 TLK1Q9UKI8 766 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ADAMTS5Q9UNA0 930 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 DNAH12Q6ZR08 3092 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 COL11A1P12107 1806 aaPredicted RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 TMX2-CTNND1H3BSU7 103 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 MPOP05164 745 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 RXRGP48443 463 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 MAPK10P53779 464 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 KIZQ2M2Z5 673 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 PKDCCQ504Y2 493 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 LIPMQ5VYY2 423 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 LSMEM2Q8N112 164 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 TMEM151AQ8N4L1 468 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 OR6B3Q8NGW1 331 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 FAM110BQ8TC76 370 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 LZICQ8WZA0 190 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 IRGQQ8WZA9 623 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 FAM149B1Q96BN6 582 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 BFARQ9NZS9 450 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 EBF1Q9UH73 591 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 USP3Q9Y6I4 520 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 A0A087WZ62 844 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 CDK9P50750 372 aaKnown RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 PSME3P61289 254 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 RBP5P82980 135 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 PDAP1Q13442 181 aaKnown RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 KCNMB4Q86W47 210 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 RAVER1Q8IY67 606 aaKnown RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 CPSF7Q8N684 471 aaKnown RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 KIF12Q96FN5 646 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 FDXACB1Q9BRP7 624 aaPredicted RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 R3HDMLQ9H3Y0 253 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 SELENONQ9NZV5 590 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 RGS17Q9UGC6 210 aaPredicted RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 MYRFQ9Y2G1 1151 aa13.9□□□□□ -0.18
USP49-201ENST00000373006 TMA7Q9Y2S6 64 aaKnown RBP13.9□□□□□ -0.18
USP49-201ENST00000373006 SPTLC1O15269 473 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 NDUFB5O43674 189 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 NFKBIAP25963 317 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 VARSP26640 1264 aaKnown RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 GJA8P48165 433 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 PRKAA1Q13131 559 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 TRIM25Q14258 630 aaKnown RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 USP10Q14694 798 aaKnown RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 DGKDQ16760 1214 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 METTL7BQ6UX53 244 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 HERC6Q8IVU3 1022 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 FSTL5Q8N475 847 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 FNDC8Q8TC99 324 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 LPGAT1Q92604 370 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 RMND5BQ96G75 393 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 GMPR2Q9P2T1 348 aaKnown RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 IGKV6-21A0A0C4DH24 114 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 C9IYK1 514 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 TRIM38O00635 465 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 SEC24DO94855 1032 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 HNRNPLP14866 589 aaKnown RBP eCLIP13.89□□□□□ -0.191e-10■■■■■ 34.2
USP49-201ENST00000373006 ETFBP38117 255 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 PTPN9P43378 593 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ADRM1Q16186 407 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ANKDD1AQ495B1 522 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 CCDC92Q53HC0 331 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 PITRM1Q5JRX3 1037 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 CATSPERGQ6ZRH7 1159 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 RPS27LQ71UM5 84 aaKnown RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 CLVS1Q8IUQ0 354 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 FAM47BQ8NA70 645 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 GIPC3Q8TF64 312 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ZNF597Q96LX8 424 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 C11orf84Q9BUA3 381 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 ZNF385DQ9H6B1 395 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 VRTNQ9H8Y1 702 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 EIF2B3Q9NR50 452 aaKnown RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 CCDC167Q9P0B6 97 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 TUBGCP4Q9UGJ1 667 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ADAM28Q9UKQ2 775 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 KIAA1257Q9ULG3 409 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 CLEC11AQ9Y240 323 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 PCDHGA7Q9Y5G6 932 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 BPTFQ12830 3046 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 SOWAHBA6NEL2 793 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 HACD1B0YJ81 288 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 H3BNH8 94 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ZNF24P17028 368 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 BAG6P46379 1132 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms